Gm54443 Gene Detail

Summary

• Symbol
  Gm54443
• Name
  predicted gene, 54443

• Feature Type
  miRNA gene
• IDs
  MGI:6845366
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:103887889-103887993 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845366	miRNA gene	Chr14:103887889-103887993 (-)
129S1/SvImJ	ENSMUSG00200018053	miRNA gene	Chr14:92469134-92469238 (-)
A/J	ENSMUSG00195020220	miRNA gene	Chr14:92572479-92572583 (-)
AKR/J	ENSMUSG00220002537	miRNA gene	Chr14:92003761-92003865 (-)
BALB/cJ	ENSMUSG00180004601	miRNA gene	Chr14:92055296-92055400 (-)
C3H/HeJ	ENSMUSG00175014515	miRNA gene	Chr14:93946581-93946685 (-)
C57BL/6NJ	ENSMUSG00215017790	miRNA gene	Chr14:92137621-92137725 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002967	miRNA gene	Chr14:93568137-93568241 (-)
CBA/J	ENSMUSG00210007839	miRNA gene	Chr14:92634773-92634877 (-)
DBA/2J	ENSMUSG00185011483	miRNA gene	Chr14:97808667-97808771 (-)
FVB/NJ	ENSMUSG00205013632	miRNA gene	Chr14:91761151-91761255 (-)
JF1/MsJ	ENSUMUG00000013550	miRNA gene	Chr14:108820560-108820664 (-)
LP/J	ENSMUSG00230004134	miRNA gene	Chr14:109689578-109689682 (-)
NOD/ShiLtJ	ENSMUSG00190009612	miRNA gene	Chr14:92414917-92415021 (-)
NZO/HlLtJ	ENSMUSG00225025412	miRNA gene	Chr14:100073537-100073641 (-)
PWK/PhJ	ENSLUMG00010004755	miRNA gene	Chr14:91679744-91679848 (-)
SPRET/EiJ	ENSMSPG00010009586	miRNA gene	Chr14:95675570-95675674 (-)
WSB/EiJ	ENSIUOG00005018737	miRNA gene	Chr14:91628995-91629099 (-)

Homology

• Gene Tree
  Gm54443
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076273 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076273	Ensembl Gene Model | MGI Sequence Detail	105	C57BL/6J
transcript	ENSMUST00020182595	Ensembl | MGI Sequence Detail	105	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54443:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130116	Chr14:103888811-103888820 (-)	-823 bp