Gm54440 Gene Detail

Summary

• Symbol
  Gm54440
• Name
  predicted gene, 54440

• Feature Type
  miRNA gene
• IDs
  MGI:6845360
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:8004809-8004888 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  67 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845360	miRNA gene	Chr15:8004809-8004888 (+)
129S1/SvImJ	ENSMUSG00200034084	miRNA gene	Chr15:4980691-4980770 (+)
A/J	ENSMUSG00195010804	miRNA gene	Chr15:4898086-4898165 (+)
AKR/J	ENSMUSG00220023114	miRNA gene	Chr15:4736138-4736217 (+)
BALB/cJ	ENSMUSG00180036323	miRNA gene	Chr15:4875252-4875331 (+)
C3H/HeJ	ENSMUSG00175034152	miRNA gene	Chr15:5041782-5041861 (+)
C57BL/6NJ	ENSMUSG00215030435	miRNA gene	Chr15:4888483-4888562 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026679	miRNA gene	Chr15:4915612-4915691 (+)
CBA/J	ENSMUSG00210025671	miRNA gene	Chr15:5026765-5026844 (+)
DBA/2J	ENSMUSG00185032250	miRNA gene	Chr15:4975291-4975370 (+)
FVB/NJ	ENSMUSG00205031906	miRNA gene	Chr15:4899418-4899497 (+)
JF1/MsJ	ENSUMUG00000036647	miRNA gene	Chr15:4987292-4987371 (+)
LP/J	ENSMUSG00230020331	miRNA gene	Chr15:8473790-8473869 (+)
NOD/ShiLtJ	ENSMUSG00190010320	miRNA gene	Chr15:4969392-4969471 (+)
NZO/HlLtJ	ENSMUSG00225034728	miRNA gene	Chr15:8725758-8725837 (+)
PWK/PhJ	ENSLUMG00010036730	miRNA gene	Chr15:5013783-5013862 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005030503	miRNA gene	Chr15:4880189-4880268 (+)

Homology

• Gene Tree
  Gm54440
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00002076238 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076238	Ensembl Gene Model | MGI Sequence Detail	80	C57BL/6J
transcript	ENSMUST00020183062	Ensembl | MGI Sequence Detail	80	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;