Gm54433 Gene Detail

Summary

• Symbol
  Gm54433
• Name
  predicted gene, 54433

• Feature Type
  miRNA gene
• IDs
  MGI:6845346
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr12:55867848-55867938 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  61 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845346	miRNA gene	Chr12:55867848-55867938 (-)
129S1/SvImJ	ENSMUSG00200030839	miRNA gene	Chr12:47777462-47777552 (-)
A/J	ENSMUSG00195018228	miRNA gene	Chr12:50344257-50344347 (-)
AKR/J	ENSMUSG00220028097	miRNA gene	Chr12:48362606-48362696 (-)
BALB/cJ	ENSMUSG00180006121	miRNA gene	Chr12:49365187-49365277 (-)
C3H/HeJ	ENSMUSG00175016892	miRNA gene	Chr12:52406340-52406430 (-)
C57BL/6NJ	ENSMUSG00215021311	miRNA gene	Chr12:48711735-48711825 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009480	miRNA gene	Chr12:48797918-48798008 (-)
CBA/J	ENSMUSG00210009811	miRNA gene	Chr12:48880570-48880660 (-)
DBA/2J	ENSMUSG00185001495	miRNA gene	Chr12:50825955-50826045 (-)
FVB/NJ	ENSMUSG00205014861	miRNA gene	Chr12:48670011-48670101 (-)
JF1/MsJ	ENSUMUG00000008071	miRNA gene	Chr12:54914182-54914272 (-)
LP/J	ENSMUSG00230015955	miRNA gene	Chr12:57854416-57854506 (-)
NOD/ShiLtJ	ENSMUSG00190016953	miRNA gene	Chr12:47874375-47874465 (-)
NZO/HlLtJ	ENSMUSG00225040984	miRNA gene	Chr12:59996843-59996933 (-)
PWK/PhJ	ENSLUMG00010016523	miRNA gene	Chr12:48951284-48951374 (-)
SPRET/EiJ	ENSMSPG00010016525	miRNA gene	Chr12:50401936-50402026 (-)
WSB/EiJ	ENSIUOG00005003675	miRNA gene	Chr12:48712837-48712927 (-)

Homology

• Gene Tree
  Gm54433
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076190 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076190	Ensembl Gene Model | MGI Sequence Detail	91	C57BL/6J
transcript	ENSMUST00020183529	Ensembl | MGI Sequence Detail	91	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54433:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116359	Chr12:55867922-55867934 (-)	10 bp
Tssr116358	Chr12:55867883-55867895 (-)	49 bp
Tssr116357	Chr12:55867858-55867869 (-)	74 bp