Gm54428 Gene Detail

Summary

• Symbol
  Gm54428
• Name
  predicted gene, 54428

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6845336
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:61952094-61952292 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845336	unclassified non-coding RNA gene	Chr15:61952094-61952292 (+)
129S1/SvImJ	ENSMUSG00200030883	unclassified non-coding RNA gene	Chr15:58984739-58984937 (+)
A/J	ENSMUSG00195006542	unclassified non-coding RNA gene	Chr15:59013158-59013356 (+)
AKR/J	ENSMUSG00220020898	unclassified non-coding RNA gene	Chr15:58923445-58923643 (+)
BALB/cJ	ENSMUSG00180009971	unclassified non-coding RNA gene	Chr15:58921926-58922124 (+)
C3H/HeJ	ENSMUSG00175005048	unclassified non-coding RNA gene	Chr15:59213289-59213487 (+)
C57BL/6NJ	ENSMUSG00215017301	unclassified non-coding RNA gene	Chr15:58934216-58934414 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007068	unclassified non-coding RNA gene	Chr15:58761870-58762068 (+)
CBA/J	ENSMUSG00210007366	unclassified non-coding RNA gene	Chr15:59045029-59045227 (+)
DBA/2J	ENSMUSG00185027800	unclassified non-coding RNA gene	Chr15:58982865-58983063 (+)
FVB/NJ	ENSMUSG00205007258	unclassified non-coding RNA gene	Chr15:58744212-58744410 (+)
JF1/MsJ	ENSUMUG00000041277	unclassified non-coding RNA gene	Chr15:58749847-58750045 (+)
LP/J	ENSMUSG00230025569	unclassified non-coding RNA gene	Chr15:62310301-62310499 (+)
NOD/ShiLtJ	ENSMUSG00190017760	unclassified non-coding RNA gene	Chr15:59829155-59829353 (-)
NZO/HlLtJ	ENSMUSG00225027305	unclassified non-coding RNA gene	Chr15:62590010-62590208 (+)
PWK/PhJ	ENSLUMG00010030795	unclassified non-coding RNA gene	Chr15:59044013-59044211 (+)
SPRET/EiJ	ENSMSPG00010027262	unclassified non-coding RNA gene	Chr15:60334013-60334212 (+)
WSB/EiJ	ENSIUOG00005006953	unclassified non-coding RNA gene	Chr15:59029834-59030032 (+)

Homology

• Gene Tree
  Gm54428
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm54428
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075247 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075247	Ensembl Gene Model | MGI Sequence Detail	199	C57BL/6J
transcript	ENSMUST00020182919	Ensembl | MGI Sequence Detail	199	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:212391 Uslu VV, et al., Long-range enhancers regulating Myc expression are required for normal facial morphogenesis. Nat Genet. 2014 Jul;46(7):753-8

TSS for Gm54428:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131432	Chr15:61951868-61951873 (+)	-223 bp