Gm54427 Gene Detail

Summary

• Symbol
  Gm54427
• Name
  predicted gene, 54427

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6845334
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:61909878-61910050 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  104 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845334	unclassified non-coding RNA gene	Chr15:61909878-61910050 (+)
129S1/SvImJ	ENSMUSG00200029487	unclassified non-coding RNA gene	Chr15:58942514-58942686 (+)
A/J	ENSMUSG00195006402	unclassified non-coding RNA gene	Chr15:58970927-58971099 (+)
AKR/J	ENSMUSG00220020876	unclassified non-coding RNA gene	Chr15:58881198-58881370 (+)
BALB/cJ	ENSMUSG00180009614	unclassified non-coding RNA gene	Chr15:58879933-58880105 (+)
C3H/HeJ	ENSMUSG00175004883	unclassified non-coding RNA gene	Chr15:59171306-59171478 (+)
C57BL/6NJ	ENSMUSG00215013733	unclassified non-coding RNA gene	Chr15:58891989-58892161 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007070	unclassified non-coding RNA gene	Chr15:58720319-58720491 (+)
CBA/J	ENSMUSG00210007292	unclassified non-coding RNA gene	Chr15:59003039-59003211 (+)
DBA/2J	ENSMUSG00185027302	unclassified non-coding RNA gene	Chr15:58940648-58940820 (+)
FVB/NJ	ENSMUSG00205006896	unclassified non-coding RNA gene	Chr15:58701985-58702157 (+)
JF1/MsJ	ENSUMUG00000033902	unclassified non-coding RNA gene	Chr15:58708226-58708398 (+)
LP/J	ENSMUSG00230025608	unclassified non-coding RNA gene	Chr15:62268087-62268259 (+)
NOD/ShiLtJ	ENSMUSG00190017227	unclassified non-coding RNA gene	Chr15:59871150-59871322 (-)
NZO/HlLtJ	ENSMUSG00225027314	unclassified non-coding RNA gene	Chr15:62547786-62547958 (+)
PWK/PhJ	ENSLUMG00010029184	unclassified non-coding RNA gene	Chr15:59002981-59003153 (+)
SPRET/EiJ	ENSMSPG00010025616	unclassified non-coding RNA gene	Chr15:60292741-60292913 (+)
WSB/EiJ	ENSIUOG00005006801	unclassified non-coding RNA gene	Chr15:58988223-58988395 (+)

Homology

• Gene Tree
  Gm54427
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Transposon induced
  1
• Genomic Mutations
  1 involving Gm54427
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076665 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076665	Ensembl Gene Model | MGI Sequence Detail	173	C57BL/6J
transcript	ENSMUST00020183618	Ensembl | MGI Sequence Detail	173	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:212391 Uslu VV, et al., Long-range enhancers regulating Myc expression are required for normal facial morphogenesis. Nat Genet. 2014 Jul;46(7):753-8

TSS for Gm54427:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131427	Chr15:61909845-61909907 (+)	-2 bp