Gm54424 Gene Detail

Summary

• Symbol
  Gm54424
• Name
  predicted gene, 54424

• Feature Type
  miRNA gene
• IDs
  MGI:6845328
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:43617780-43617896 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  130 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845328	miRNA gene	Chr16:43617780-43617896 (+)
129S1/SvImJ	ENSMUSG00200029342	miRNA gene	Chr16:40516210-40516326 (+)
A/J	ENSMUSG00195011176	miRNA gene	Chr16:40087902-40088014 (+)
AKR/J	ENSMUSG00220028821	miRNA gene	Chr16:40426884-40426994 (+)
BALB/cJ	ENSMUSG00180013234	miRNA gene	Chr16:40294424-40294534 (+)
C3H/HeJ	ENSMUSG00175031711	miRNA gene	Chr16:40571716-40571832 (+)
C57BL/6NJ	ENSMUSG00215008048	miRNA gene	Chr16:40397735-40397851 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005012983	miRNA gene	Chr16:40834032-40834130 (+)
CBA/J	ENSMUSG00210028679	miRNA gene	Chr16:40594485-40594601 (+)
DBA/2J	ENSMUSG00185024838	miRNA gene	Chr16:40474162-40474272 (+)
FVB/NJ	ENSMUSG00205024990	miRNA gene	Chr16:40426086-40426200 (+)
JF1/MsJ	ENSUMUG00000029925	miRNA gene	Chr16:40717053-40717147 (+)
LP/J	ENSMUSG00230029811	miRNA gene	Chr16:43069448-43069564 (+)
NOD/ShiLtJ	ENSMUSG00190018947	miRNA gene	Chr16:40603926-40604036 (+)
NZO/HlLtJ	ENSMUSG00225028937	miRNA gene	Chr16:46155368-46155484 (+)
PWK/PhJ	ENSLUMG00010027863	miRNA gene	Chr16:40608171-40608267 (+)
SPRET/EiJ	ENSMSPG00010007454	miRNA gene	Chr16:40645750-40645862 (+)
WSB/EiJ	ENSIUOG00005013617	miRNA gene	Chr16:40714259-40714369 (+)

Homology

• Gene Tree
  Gm54424
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075199 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075199	Ensembl Gene Model | MGI Sequence Detail	117	C57BL/6J
transcript	ENSMUST00020182164	Ensembl | MGI Sequence Detail	117	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;