Gm54421 Gene Detail

Summary

• Symbol
  Gm54421
• Name
  predicted gene, 54421

• Feature Type
  miRNA gene
• IDs
  MGI:6845322
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr15:82666283-82666342 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  136 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845322	miRNA gene	Chr15:82666283-82666342 (-)
129S1/SvImJ	ENSMUSG00200054236	miRNA gene	Chr15:79779996-79780055 (-)
A/J	ENSMUSG00195052218	miRNA gene	Chr15:79711663-79711722 (-)
AKR/J	ENSMUSG00220053122	miRNA gene	Chr15:79754831-79754890 (-)
BALB/cJ	ENSMUSG00180053559	miRNA gene	Chr15:79588588-79588647 (-)
C3H/HeJ	ENSMUSG00175053465	miRNA gene	Chr15:79899550-79899609 (-)
C57BL/6NJ	ENSMUSG00215052898	miRNA gene	Chr15:79683872-79683931 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048991	miRNA gene	Chr15:79180185-79180244 (-)
CBA/J	ENSMUSG00210049268	miRNA gene	Chr15:79674630-79674689 (-)
DBA/2J	ENSMUSG00185051434	miRNA gene	Chr15:79707049-79707108 (-)
FVB/NJ	ENSMUSG00205051413	miRNA gene	Chr15:79454052-79454111 (-)
JF1/MsJ	ENSUMUG00000056810	miRNA gene	Chr15:79243837-79243896 (-)
LP/J	ENSMUSG00230045997	miRNA gene	Chr15:83020345-83020404 (-)
NOD/ShiLtJ	ENSMUSG00190053693	miRNA gene	Chr15:79691736-79691795 (-)
NZO/HlLtJ	ENSMUSG00225050323	miRNA gene	Chr15:83358916-83358975 (-)
PWK/PhJ	ENSLUMG00010052914	miRNA gene	Chr15:79452875-79452934 (-)
SPRET/EiJ	ENSMSPG00010050998	miRNA gene	Chr15:81117275-81117334 (-)
WSB/EiJ	ENSIUOG00005050258	miRNA gene	Chr15:79780615-79780674 (-)

Homology

• Gene Tree
  Gm54421
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076806 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076806	Ensembl Gene Model | MGI Sequence Detail	60	C57BL/6J
transcript	ENSMUST00020182661	Ensembl | MGI Sequence Detail	60	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54421:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr135565	Chr15:82666380-82666385 (-)	-41 bp