Gm54409 Gene Detail

Summary

• Symbol
  Gm54409
• Name
  predicted gene, 54409

• Feature Type
  rRNA gene
• IDs
  MGI:6845298
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:41038107-41038198 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845298	rRNA gene	Chr16:41038107-41038198 (+)
129S1/SvImJ	ENSMUSG00200030447	rRNA gene	Chr16:37962913-37963004 (+)
A/J	ENSMUSG00195011259	rRNA gene	Chr16:37507693-37507784 (+)
AKR/J	ENSMUSG00220030944	rRNA gene	Chr16:37866808-37866899 (+)
BALB/cJ	ENSMUSG00180013494	rRNA gene	Chr16:37715877-37715968 (+)
C3H/HeJ	ENSMUSG00175034192	rRNA gene	Chr16:37978835-37978926 (+)
C57BL/6NJ	ENSMUSG00215026612	rRNA gene	Chr16:37810989-37811080 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005033929	rRNA gene	Chr16:38264047-38264138 (+)
CBA/J	ENSMUSG00210029349	rRNA gene	Chr16:38016751-38016842 (+)
DBA/2J	ENSMUSG00185025176	rRNA gene	Chr16:37902985-37903076 (+)
FVB/NJ	ENSMUSG00205028153	rRNA gene	Chr16:37844382-37844473 (+)
JF1/MsJ	ENSUMUG00000041155	rRNA gene	Chr16:38126388-38126479 (+)
LP/J	ENSMUSG00230033913	rRNA gene	Chr16:40491797-40491888 (+)
NOD/ShiLtJ	ENSMUSG00190024126	rRNA gene	Chr16:38005806-38005897 (+)
NZO/HlLtJ	ENSMUSG00225028924	rRNA gene	Chr16:43574359-43574450 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010018635	rRNA gene	Chr16:38058380-38058470 (+)
WSB/EiJ	ENSIUOG00005027681	rRNA gene	Chr16:38128547-38128638 (+)

Homology

• Gene Tree
  Gm54409
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00002076095 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076095	Ensembl Gene Model | MGI Sequence Detail	92	C57BL/6J
transcript	ENSMUST00020183374	Ensembl | MGI Sequence Detail	92	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;