Gm54406 Gene Detail

Summary

• Symbol
  Gm54406
• Name
  predicted gene, 54406

• Feature Type
  unclassified non-coding RNA gene
• IDs
  MGI:6845292
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:6530178-6530453 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  101 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845292	unclassified non-coding RNA gene	Chr15:6530178-6530453 (+)
129S1/SvImJ	ENSMUSG00200034523	unclassified non-coding RNA gene	Chr15:3505463-3505738 (+)
A/J	ENSMUSG00195010286	unclassified non-coding RNA gene	Chr15:3422848-3423123 (+)
AKR/J	ENSMUSG00220023066	unclassified non-coding RNA gene	Chr15:3302363-3302638 (+)
BALB/cJ	ENSMUSG00180035951	unclassified non-coding RNA gene	Chr15:3399965-3400240 (+)
C3H/HeJ	ENSMUSG00175031863	unclassified non-coding RNA gene	Chr15:3560152-3560427 (+)
C57BL/6NJ	ENSMUSG00215030290	unclassified non-coding RNA gene	Chr15:3413311-3413586 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026541	unclassified non-coding RNA gene	Chr15:3492808-3493083 (+)
CBA/J	ENSMUSG00210025902	unclassified non-coding RNA gene	Chr15:3545119-3545394 (+)
DBA/2J	ENSMUSG00185032480	unclassified non-coding RNA gene	Chr15:3498179-3498454 (+)
FVB/NJ	ENSMUSG00205030314	unclassified non-coding RNA gene	Chr15:3420786-3421061 (+)
JF1/MsJ	ENSUMUG00000036846	unclassified non-coding RNA gene	Chr15:3538920-3539195 (+)
LP/J	ENSMUSG00230019676	unclassified non-coding RNA gene	Chr15:6998707-6998982 (+)
NOD/ShiLtJ	ENSMUSG00190009951	unclassified non-coding RNA gene	Chr15:3487715-3487990 (+)
NZO/HlLtJ	ENSMUSG00225034832	unclassified non-coding RNA gene	Chr15:7250602-7250877 (+)
PWK/PhJ	ENSLUMG00010037695	unclassified non-coding RNA gene	Chr15:3572858-3573133 (+)
SPRET/EiJ	ENSMSPG00010033926	unclassified non-coding RNA gene	Chr15:3599259-3599552 (+)
WSB/EiJ	ENSIUOG00005030539	unclassified non-coding RNA gene	Chr15:3403612-3403887 (+)

Homology

• Gene Tree
  Gm54406
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076063 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076063	Ensembl Gene Model | MGI Sequence Detail	276	C57BL/6J
transcript	ENSMUST00020183006	Ensembl | MGI Sequence Detail	276	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;