Gm54404 Gene Detail

Summary

• Symbol
  Gm54404
• Name
  predicted gene, 54404

• Feature Type
  miRNA gene
• IDs
  MGI:6845288
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:100938057-100938173 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  118 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845288	miRNA gene	Chr14:100938057-100938173 (+)
129S1/SvImJ	ENSMUSG00200019651	miRNA gene	Chr14:89484764-89484880 (+)
A/J	ENSMUSG00195019468	miRNA gene	Chr14:89611651-89611767 (+)
AKR/J	ENSMUSG00220002364	miRNA gene	Chr14:89031188-89031304 (+)
BALB/cJ	ENSMUSG00180004481	miRNA gene	Chr14:89094487-89094603 (+)
C3H/HeJ	ENSMUSG00175002624	miRNA gene	Chr14:90960589-90960705 (+)
C57BL/6NJ	ENSMUSG00215019899	miRNA gene	Chr14:89178751-89178867 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005016304	miRNA gene	Chr14:90604192-90604322 (+)
CBA/J	ENSMUSG00210007727	miRNA gene	Chr14:89663807-89663923 (+)
DBA/2J	ENSMUSG00185011055	miRNA gene	Chr14:94847880-94847996 (+)
FVB/NJ	ENSMUSG00205014408	miRNA gene	Chr14:88752033-88752149 (+)
JF1/MsJ	ENSUMUG00000013843	miRNA gene	Chr14:105827996-105828113 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190009987	miRNA gene	Chr14:89457393-89457509 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010004867	miRNA gene	Chr14:88725194-88725310 (+)
SPRET/EiJ	ENSMSPG00010010205	miRNA gene	Chr14:92663297-92663456 (+)
WSB/EiJ	ENSIUOG00005018630	miRNA gene	Chr14:88651172-88651290 (+)

Homology

• Gene Tree
  Gm54404
  

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00002075538 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075538	Ensembl Gene Model | MGI Sequence Detail	117	C57BL/6J
transcript	ENSMUST00020183769	Ensembl | MGI Sequence Detail	117	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;