Gm54401 Gene Detail

Summary

• Symbol
  Gm54401
• Name
  predicted gene, 54401

• Feature Type
  snRNA gene
• IDs
  MGI:6845282
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr19:4954701-4954810 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  102 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845282	snRNA gene	Chr19:4954701-4954810 (+)
129S1/SvImJ	ENSMUSG00200052491	snRNA gene	Chr19:1715061-1715170 (+)
A/J	ENSMUSG00195053021	snRNA gene	Chr19:2104531-2104640 (+)
AKR/J	ENSMUSG00220050155	snRNA gene	Chr19:1877585-1877694 (+)
BALB/cJ	ENSMUSG00180052515	snRNA gene	Chr19:2479250-2479359 (+)
C3H/HeJ	ENSMUSG00175014225	snRNA gene	Chr19:1723984-1724093 (+)
C57BL/6NJ	ENSMUSG00215047062	snRNA gene	Chr19:1953216-1953325 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044724	snRNA gene	Chr19:1875277-1875386 (+)
CBA/J	ENSMUSG00210050636	snRNA gene	Chr19:1729822-1729931 (+)
DBA/2J	ENSMUSG00185052339	snRNA gene	Chr19:2106291-2106400 (+)
FVB/NJ	ENSMUSG00205053387	snRNA gene	Chr19:2106204-2106313 (+)
JF1/MsJ	ENSUMUG00000056782	snRNA gene	Chr19:2093943-2094052 (+)
LP/J	ENSMUSG00230054212	snRNA gene	Chr19:3022007-3022116 (+)
NOD/ShiLtJ	ENSMUSG00190053441	snRNA gene	Chr19:1645510-1645619 (+)
NZO/HlLtJ	ENSMUSG00225027133	snRNA gene	Chr19:6730761-6730870 (+)
PWK/PhJ	ENSLUMG00010008918	snRNA gene	Chr19:1858172-1858281 (+)
SPRET/EiJ	ENSMSPG00010050807	snRNA gene	Chr19:1853630-1853730 (+)
WSB/EiJ	ENSIUOG00005050797	snRNA gene	Chr19:1740922-1741031 (+)

Homology

• Gene Tree
  Gm54401
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002074886 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002074886	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020183050	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;