Gm54400 Gene Detail

Summary

• Symbol
  Gm54400
• Name
  predicted gene, 54400

• Feature Type
  miRNA gene
• IDs
  MGI:6845280
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:82432825-82432884 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845280	miRNA gene	Chr15:82432825-82432884 (-)
129S1/SvImJ	ENSMUSG00200053883	miRNA gene	Chr15:79546544-79546603 (-)
A/J	ENSMUSG00195051900	miRNA gene	Chr15:79478203-79478262 (-)
AKR/J	ENSMUSG00220053047	miRNA gene	Chr15:79521380-79521439 (-)
BALB/cJ	ENSMUSG00180053943	miRNA gene	Chr15:79355135-79355194 (-)
C3H/HeJ	ENSMUSG00175053387	miRNA gene	Chr15:79666100-79666159 (-)
C57BL/6NJ	ENSMUSG00215053240	miRNA gene	Chr15:79450411-79450470 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047405	miRNA gene	Chr15:78939018-78939077 (-)
CBA/J	ENSMUSG00210049020	miRNA gene	Chr15:79441188-79441247 (-)
DBA/2J	ENSMUSG00185052261	miRNA gene	Chr15:79464981-79465040 (-)
FVB/NJ	ENSMUSG00205051255	miRNA gene	Chr15:79208865-79208924 (-)
JF1/MsJ	ENSUMUG00000056804	miRNA gene	Chr15:79009794-79009853 (-)
LP/J	ENSMUSG00230045989	miRNA gene	Chr15:82786907-82786966 (-)
NOD/ShiLtJ	ENSMUSG00190053955	miRNA gene	Chr15:79458282-79458341 (-)
NZO/HlLtJ	ENSMUSG00225050317	miRNA gene	Chr15:83125466-83125525 (-)
PWK/PhJ	ENSLUMG00010052016	miRNA gene	Chr15:79219963-79220022 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005050304	miRNA gene	Chr15:79540677-79540736 (-)

Homology

• Gene Tree
  Gm54400
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00002076526 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076526	Ensembl Gene Model | MGI Sequence Detail	60	C57BL/6J
transcript	ENSMUST00020183797	Ensembl | MGI Sequence Detail	60	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;