Gm54397 Gene Detail

Summary

• Symbol
  Gm54397
• Name
  predicted gene, 54397

• Feature Type
  miRNA gene
• IDs
  MGI:6845274
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:85765277-85765337 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  98 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845274	miRNA gene	Chr12:85765277-85765337 (-)
129S1/SvImJ	ENSMUSG00200050336	miRNA gene	Chr12:77780501-77780561 (-)
A/J	ENSMUSG00195035927	miRNA gene	Chr12:80400147-80400207 (-)
AKR/J	ENSMUSG00220049290	miRNA gene	Chr12:78196080-78196140 (-)
BALB/cJ	ENSMUSG00180025666	miRNA gene	Chr12:79437871-79437931 (-)
C3H/HeJ	ENSMUSG00175040714	miRNA gene	Chr12:82530932-82530992 (-)
C57BL/6NJ	ENSMUSG00215046471	miRNA gene	Chr12:78744346-78744406 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032915	miRNA gene	Chr12:78706103-78706162 (-)
CBA/J	ENSMUSG00210046597	miRNA gene	Chr12:78944130-78944190 (-)
DBA/2J	ENSMUSG00185002623	miRNA gene	Chr12:80801383-80801443 (-)
FVB/NJ	ENSMUSG00205040565	miRNA gene	Chr12:78612939-78612999 (-)
JF1/MsJ	ENSUMUG00000048256	miRNA gene	Chr12:84786671-84786731 (-)
LP/J	ENSMUSG00230045816	miRNA gene	Chr12:87863564-87863624 (-)
NOD/ShiLtJ	ENSMUSG00190049641	miRNA gene	Chr12:78001134-78001194 (-)
NZO/HlLtJ	ENSMUSG00225052742	miRNA gene	Chr12:89900697-89900757 (-)
PWK/PhJ	ENSLUMG00010029304	miRNA gene	Chr12:78806687-78806747 (-)
SPRET/EiJ	ENSMSPG00010020217	miRNA gene	Chr12:80623154-80623214 (-)
WSB/EiJ	ENSIUOG00005046103	miRNA gene	Chr12:78653660-78653720 (-)

Homology

• Gene Tree
  Gm54397
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075690 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075690	Ensembl Gene Model | MGI Sequence Detail	61	C57BL/6J
transcript	ENSMUST00020182400	Ensembl | MGI Sequence Detail	61	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;