Gm54388 Gene Detail

Summary

• Symbol
  Gm54388
• Name
  predicted gene, 54388

• Feature Type
  miRNA gene
• IDs
  MGI:6845256
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:16817128-16817224 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845256	miRNA gene	Chr12:16817128-16817224 (-)
129S1/SvImJ	ENSMUSG00200023530	miRNA gene	Chr12:13858855-13858917 (-)
A/J	ENSMUSG00195021761	miRNA gene	Chr12:13871092-13871166 (-)
AKR/J	ENSMUSG00220029780	miRNA gene	Chr12:13955559-13955621 (-)
BALB/cJ	ENSMUSG00180010722	miRNA gene	Chr12:13849722-13849796 (-)
C3H/HeJ	ENSMUSG00175005948	miRNA gene	Chr12:13881254-13881322 (-)
C57BL/6NJ	ENSMUSG00215006453	miRNA gene	Chr12:13651932-13652028 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006257	miRNA gene	Chr12:13368985-13369071 (-)
CBA/J	ENSMUSG00210008109	miRNA gene	Chr12:13893126-13893194 (-)
DBA/2J	ENSMUSG00185004333	miRNA gene	Chr12:13805448-13805510 (-)
FVB/NJ	ENSMUSG00205001739	miRNA gene	Chr12:13757903-13757965 (-)
JF1/MsJ	ENSUMUG00000011227	miRNA gene	Chr12:13723260-13723356 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190014513	miRNA gene	Chr12:15088142-15088210 (-)
NZO/HlLtJ	ENSMUSG00225030112	miRNA gene	Chr12:17730517-17730579 (-)
PWK/PhJ	ENSLUMG00010004574	miRNA gene	Chr12:13497444-13497540 (-)
SPRET/EiJ	ENSMSPG00010003005	miRNA gene	Chr12:14474690-14474761 (-)
WSB/EiJ	ENSIUOG00005001904	miRNA gene	Chr12:13864099-13864176 (-)

Homology

• Gene Tree
  Gm54388
  

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00002074932 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002074932	Ensembl Gene Model | MGI Sequence Detail	97	C57BL/6J
transcript	ENSMUST00020183626	Ensembl | MGI Sequence Detail	97	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;