Gm54385 Gene Detail

Summary

• Symbol
  Gm54385
• Name
  predicted gene, 54385

• Feature Type
  rRNA gene
• IDs
  MGI:6845250
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:37675144-37675259 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845250	rRNA gene	Chr16:37675144-37675259 (+)
129S1/SvImJ	ENSMUSG00200029504	rRNA gene	Chr16:34611266-34611381 (+)
A/J	ENSMUSG00195011250	rRNA gene	Chr16:34156518-34156633 (+)
AKR/J	ENSMUSG00220029463	rRNA gene	Chr16:34544520-34544635 (+)
BALB/cJ	ENSMUSG00180013340	rRNA gene	Chr16:34372147-34372262 (+)
C3H/HeJ	ENSMUSG00175032791	rRNA gene	Chr16:34598207-34598322 (+)
C57BL/6NJ	ENSMUSG00215023164	rRNA gene	Chr16:34446897-34447012 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032712	rRNA gene	Chr16:34904836-34904951 (+)
CBA/J	ENSMUSG00210028767	rRNA gene	Chr16:34655283-34655398 (+)
DBA/2J	ENSMUSG00185025048	rRNA gene	Chr16:34558292-34558407 (+)
FVB/NJ	ENSMUSG00205025405	rRNA gene	Chr16:34532691-34532806 (+)
JF1/MsJ	ENSUMUG00000040052	rRNA gene	Chr16:34800972-34801087 (+)
LP/J	ENSMUSG00230032905	rRNA gene	Chr16:37130444-37130559 (+)
NOD/ShiLtJ	ENSMUSG00190023760	rRNA gene	Chr16:34675260-34675375 (+)
NZO/HlLtJ	ENSMUSG00225040262	rRNA gene	Chr16:40229750-40229865 (+)
PWK/PhJ	ENSLUMG00010029456	rRNA gene	Chr16:34701334-34701449 (+)
SPRET/EiJ	ENSMSPG00010018120	rRNA gene	Chr16:34667336-34667451 (+)
WSB/EiJ	ENSIUOG00005027062	rRNA gene	Chr16:34757468-34757583 (+)

Homology

• Gene Tree
  Gm54385
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075418 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075418	Ensembl Gene Model | MGI Sequence Detail	116	C57BL/6J
transcript	ENSMUST00020183128	Ensembl | MGI Sequence Detail	116	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;