Gm54380 Gene Detail

Summary

• Symbol
  Gm54380
• Name
  predicted gene, 54380

• Feature Type
  miRNA gene
• IDs
  MGI:6845240
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr12:110640534-110640636 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845240	miRNA gene	Chr12:110640534-110640636 (+)
129S1/SvImJ	ENSMUSG00200029266	miRNA gene	Chr12:102415436-102415538 (+)
A/J	ENSMUSG00195047376	miRNA gene	Chr12:104933335-104933437 (+)
AKR/J	ENSMUSG00220038371	miRNA gene	Chr12:102833220-102833322 (+)
BALB/cJ	ENSMUSG00180049917	miRNA gene	Chr12:104178548-104178650 (+)
C3H/HeJ	ENSMUSG00175039996	miRNA gene	Chr12:106747328-106747430 (+)
C57BL/6NJ	ENSMUSG00215051153	miRNA gene	Chr12:103451387-103451489 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020396	miRNA gene	Chr12:102921503-102921605 (+)
CBA/J	ENSMUSG00210035905	miRNA gene	Chr12:103808781-103808883 (+)
DBA/2J	ENSMUSG00185030926	miRNA gene	Chr12:105636086-105636188 (+)
FVB/NJ	ENSMUSG00205035729	miRNA gene	Chr12:102863309-102863411 (+)
JF1/MsJ	ENSUMUG00000041163	miRNA gene	Chr12:110402774-110402876 (+)
LP/J	ENSMUSG00230044453	miRNA gene	Chr12:112680083-112680185 (+)
NOD/ShiLtJ	ENSMUSG00190034127	miRNA gene	Chr12:82366779-82366881 (-)
NZO/HlLtJ	ENSMUSG00225043062	miRNA gene	Chr12:114428256-114428358 (+)
PWK/PhJ	ENSLUMG00010051946	miRNA gene	Chr12:103860122-103860224 (+)
SPRET/EiJ	ENSMSPG00010025507	miRNA gene	Chr12:106143998-106144098 (+)
WSB/EiJ	ENSIUOG00005009438	miRNA gene	Chr12:102846348-102846450 (+)

Homology

• Gene Tree
  Gm54380
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002075089 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075089	Ensembl Gene Model | MGI Sequence Detail	103	C57BL/6J
transcript	ENSMUST00020181741	Ensembl | MGI Sequence Detail	103	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;