Gm54379 Gene Detail

Summary

• Symbol
  Gm54379
• Name
  predicted gene, 54379

• Feature Type
  miRNA gene
• IDs
  MGI:6845238
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:60307389-60307498 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845238	miRNA gene	Chr18:60307389-60307498 (+)
129S1/SvImJ	ENSMUSG00200034697	miRNA gene	Chr18:57421164-57421273 (+)
A/J	ENSMUSG00195027591	miRNA gene	Chr3:61884397-61884506 (+)
A/J	ENSMUSG00195005520	miRNA gene	Chr18:57539314-57539423 (+)
AKR/J	ENSMUSG00220016501	miRNA gene	Chr18:57517638-57517747 (+)
AKR/J	ENSMUSG00220025921	miRNA gene	Chr3:61904740-61904849 (+)
BALB/cJ	ENSMUSG00180004875	miRNA gene	Chr4:2730909-2731018 (-)
BALB/cJ	ENSMUSG00180002059	miRNA gene	Chr4:14975452-14975561 (+)
BALB/cJ	ENSMUSG00180012936	miRNA gene	Chr18:58110916-58111025 (+)
BALB/cJ	ENSMUSG00180008858	miRNA gene	Chr3:61923120-61923229 (+)
C3H/HeJ	ENSMUSG00175003969	miRNA gene	Chr3:61772788-61772897 (+)
C3H/HeJ	ENSMUSG00175036394	miRNA gene	Chr18:57719770-57719879 (+)
C57BL/6NJ	ENSMUSG00215039896	miRNA gene	Chr18:57039591-57039700 (+)
C57BL/6NJ	ENSMUSG00215007763	miRNA gene	Chr3:62246581-62246690 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005027380	miRNA gene	Chr18:56881004-56881113 (+)
CAST/EiJ	ENSTCUG00005027171	miRNA gene	Chr4:3041344-3041453 (-)
CBA/J	ENSMUSG00210032596	miRNA gene	Chr18:57675163-57675272 (+)
DBA/2J	ENSMUSG00185016090	miRNA gene	Chr18:57566997-57567106 (+)
DBA/2J	ENSMUSG00185016003	miRNA gene	Chr3:62040173-62040282 (+)
FVB/NJ	ENSMUSG00205017974	miRNA gene	Chr18:56904899-56905008 (+)
FVB/NJ	ENSMUSG00205000578	miRNA gene	Chr4:26285649-26285755 (+)
FVB/NJ	ENSMUSG00205003762	miRNA gene	Chr4:2785331-2785440 (-)
JF1/MsJ	ENSUMUG00000037639	miRNA gene	Chr18:57434027-57434136 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190014552	miRNA gene	Chr4:2827033-2827142 (-)
NOD/ShiLtJ	ENSMUSG00190033285	miRNA gene	Chr18:57322683-57322792 (+)
NOD/ShiLtJ	ENSMUSG00190003434	miRNA gene	Chr3:62335719-62335828 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010008452	miRNA gene	Chr18:57567315-57567424 (+)
SPRET/EiJ	ENSMSPG00010019341	miRNA gene	Chr18:58001785-58001894 (+)
WSB/EiJ	ENSIUOG00005009459	miRNA gene	Chr18:57201718-57201827 (+)
WSB/EiJ	ENSIUOG00005005504	miRNA gene	Chr4:26408829-26408935 (+)
WSB/EiJ	ENSIUOG00005048898	miRNA gene	Chr9:105607131-105607236 (-)

Homology

• Gene Tree
  Gm54379
  

Sequences &
Gene Models

• All Sequences
  33

• Ensembl
  ENSMUSG00002075688 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002075688	Ensembl Gene Model | MGI Sequence Detail	110	C57BL/6J
transcript	ENSMUST00020182222	Ensembl | MGI Sequence Detail	110	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;