Gm54360 Gene Detail

Summary

• Symbol
  Gm54360
• Name
  predicted gene, 54360

• Feature Type
  miRNA gene
• IDs
  MGI:6845200
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:56099924-56100013 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  152 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6845200	miRNA gene	Chr18:56099924-56100013 (-)
129S1/SvImJ	ENSMUSG00200034405	miRNA gene	Chr18:53165821-53165914 (-)
A/J	ENSMUSG00195005650	miRNA gene	Chr18:53293387-53293480 (-)
AKR/J	ENSMUSG00220016481	miRNA gene	Chr18:53279091-53279184 (-)
BALB/cJ	ENSMUSG00180012676	miRNA gene	Chr18:53864374-53864467 (-)
C3H/HeJ	ENSMUSG00175037284	miRNA gene	Chr18:53479346-53479441 (-)
C57BL/6NJ	ENSMUSG00215040204	miRNA gene	Chr18:52828325-52828414 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028126	miRNA gene	Chr18:52699022-52699110 (-)
CBA/J	ENSMUSG00210034005	miRNA gene	Chr18:53424207-53424300 (-)
DBA/2J	ENSMUSG00185016164	miRNA gene	Chr18:53331417-53331512 (-)
FVB/NJ	ENSMUSG00205019220	miRNA gene	Chr18:52786555-52786641 (-)
JF1/MsJ	ENSUMUG00000035904	miRNA gene	Chr18:53249892-53249982 (+)
LP/J	ENSMUSG00230012224	miRNA gene	Chr18:55344004-55344097 (-)
NOD/ShiLtJ	ENSMUSG00190034665	miRNA gene	Chr18:53051624-53051717 (-)
NZO/HlLtJ	ENSMUSG00225035710	miRNA gene	Chr18:55223830-55223916 (-)
PWK/PhJ	ENSLUMG00010008735	miRNA gene	Chr18:53384918-53385005 (+)
SPRET/EiJ	ENSMSPG00010018851	miRNA gene	Chr18:53761779-53761861 (-)
WSB/EiJ	ENSIUOG00005009633	miRNA gene	Chr18:52971466-52971557 (-)

Homology

• Gene Tree
  Gm54360
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm54360
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00002076978 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00002076978	Ensembl Gene Model | MGI Sequence Detail	90	C57BL/6J
transcript	ENSMUST00020182722	Ensembl | MGI Sequence Detail	90	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67