Gm54318 Gene Detail

Summary

• Symbol
  Gm54318
• Name
  predicted gene, 54318

• Feature Type
  lncRNA gene
• IDs
  MGI:6723655
  NCBI Gene: 118568772
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:97848677-97884332 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1179 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723655	lncRNA gene	Chr5:97848655-97980411 (+)
129S1/SvImJ	ENSMUSG00200010119	lncRNA gene	Chr5:91569727-91605737 (+)
A/J	ENSMUSG00195037646	lncRNA gene	Chr5:91131266-91167236 (+)
AKR/J	ENSMUSG00220012504	lncRNA gene	Chr5:90597247-90633422 (+)
BALB/cJ	ENSMUSG00180028484	lncRNA gene	Chr5:91283961-91320132 (+)
C3H/HeJ	ENSMUSG00175036055	lncRNA gene	Chr5:93400268-93436319 (+)
C57BL/6NJ	ENSMUSG00215021418	lncRNA gene	Chr5:91231378-91267407 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039251	lncRNA gene	Chr5:90638341-90680505 (+)
CBA/J	ENSMUSG00210036593	lncRNA gene	Chr5:92159236-92195297 (+)
DBA/2J	ENSMUSG00185038800	lncRNA gene	Chr5:95075310-95111361 (+)
FVB/NJ	ENSMUSG00205036658	lncRNA gene	Chr5:91047073-91083241 (+)
JF1/MsJ	ENSUMUG00000048382	lncRNA gene	Chr5:98029311-98065626 (+)
LP/J	ENSMUSG00230028391	lncRNA gene	Chr5:99123399-99159404 (+)
NOD/ShiLtJ	ENSMUSG00190028519	lncRNA gene	Chr5:91060060-91096025 (+)
NZO/HlLtJ	ENSMUSG00225013203	lncRNA gene	Chr5:106873286-106909449 (+)
PWK/PhJ	ENSLUMG00010031729	lncRNA gene	Chr5:90149853-90187725 (+)
SPRET/EiJ	ENSMSPG00010027907	lncRNA gene	Chr5:93020416-93057651 (+)
WSB/EiJ	ENSIUOG00005033665	lncRNA gene	Chr5:93773402-93809333 (+)

Homology

• Gene Tree
  Gm54318
  

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000120552 (Evidence)
• NCBI Gene
  118568772

Representative Sequences			Length	Strain/Species
genomic	118568772	NCBI Gene Model | MGI Sequence Detail	35656	C57BL/6J
transcript	XR_004942713	RefSeq | MGI Sequence Detail	731	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54318:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr47431	Chr5:97848657-97848674 (+)	-11 bp
Tssr1553	Chr5:97858053-97858054 (+)	9,377 bp