Gm54310 Gene Detail

Summary

• Symbol
  Gm54310
• Name
  predicted gene, 54310

• Feature Type
  lncRNA gene
• IDs
  MGI:6723639
  NCBI Gene: 118568764
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:142409351-142410642 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723639	lncRNA gene	Chr5:142409351-142415674 (-)
129S1/SvImJ	ENSMUSG00200042113	lncRNA gene	Chr5:136279382-136280624 (-)
A/J	ENSMUSG00195046188	lncRNA gene	Chr5:135920305-135921547 (-)
AKR/J	ENSMUSG00220023534	lncRNA gene	Chr5:135156720-135157962 (-)
BALB/cJ	ENSMUSG00180033620	lncRNA gene	Chr5:136022414-136023656 (-)
C3H/HeJ	ENSMUSG00175048671	lncRNA gene	Chr5:137948054-137949296 (-)
C57BL/6NJ	ENSMUSG00215041559	lncRNA gene	Chr5:135856529-135857771 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036428	lncRNA gene	Chr5:135300291-135301533 (-)
CBA/J	ENSMUSG00210024429	lncRNA gene	Chr5:136749208-136750450 (-)
DBA/2J	ENSMUSG00185055611	lncRNA gene	Chr5:139756163-139757405 (-)
FVB/NJ	ENSMUSG00205045899	lncRNA gene	Chr5:135578718-135579960 (-)
JF1/MsJ	ENSUMUG00000054013	lncRNA gene	Chr5:142626556-142628007 (-)
LP/J	ENSMUSG00230031229	lncRNA gene	Chr5:143883201-143884443 (-)
NOD/ShiLtJ	ENSMUSG00190047272	lncRNA gene	Chr5:135712199-135713441 (-)
NZO/HlLtJ	ENSMUSG00225023935	lncRNA gene	Chr5:151352073-151353315 (-)
PWK/PhJ	ENSLUMG00010021022	lncRNA gene	Chr5:134340589-134342038 (-)
SPRET/EiJ	ENSMSPG00010041643	lncRNA gene	Chr5:137960650-137961890 (-)
WSB/EiJ	ENSIUOG00005038997	lncRNA gene	Chr5:138241048-138242290 (-)

Homology

• Gene Tree
  Gm54310
  

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000121057 (Evidence)
• NCBI Gene
  118568764

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121057	Ensembl Gene Model | MGI Sequence Detail	1292	C57BL/6J
transcript	ENSMUST00000247020	Ensembl | MGI Sequence Detail	1292	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54310:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54278	Chr5:142410570-142410584 (-)	65 bp