Gm54266 Gene Detail

Summary

• Symbol
  Gm54266
• Name
  predicted gene, 54266

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:6723555
  NCBI Gene: 118568702
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr4:141391406-141393297 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723555	protein coding gene	Chr4:141391208-141399053 (+)
129S1/SvImJ	ENSMUSG00200047987	lncRNA gene	Chr4:134813800-134815590 (+)
A/J	ENSMUSG00195037377	lncRNA gene	Chr4:136160466-136162255 (+)
AKR/J	ENSMUSG00220048854	lncRNA gene	Chr4:135161817-135163611 (+)
BALB/cJ	ENSMUSG00180047007	lncRNA gene	Chr4:133801998-133803792 (+)
C3H/HeJ	ENSMUSG00175042688	lncRNA gene	Chr4:134828579-134830373 (+)
C57BL/6NJ	ENSMUSG00215050676	lncRNA gene	Chr4:136343079-136344868 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005013720	lncRNA gene	Chr4:135787710-135789507 (+)
CBA/J	ENSMUSG00210030182	lncRNA gene	Chr4:134452526-134454320 (+)
DBA/2J	ENSMUSG00185051638	lncRNA gene	Chr4:135960178-135961967 (+)
FVB/NJ	ENSMUSG00205041537	lncRNA gene	Chr4:134213352-134215141 (+)
JF1/MsJ	ENSUMUG00000048002	lncRNA gene	Chr4:136650531-136652325 (+)
LP/J	ENSMUSG00230040428	lncRNA gene	Chr4:139752290-139754080 (+)
NOD/ShiLtJ	ENSMUSG00190039468	lncRNA gene	Chr4:134208828-134210617 (+)
NZO/HlLtJ	ENSMUSG00225010566	lncRNA gene	Chr4:145698299-145700089 (+)
PWK/PhJ	ENSLUMG00010046602	lncRNA gene	Chr4:133645624-133647413 (+)
SPRET/EiJ	ENSMSPG00010034918	lncRNA gene	Chr4:135689729-135691528 (+)
WSB/EiJ	ENSIUOG00005048087	lncRNA gene	Chr4:134093696-134095486 (+)

Homology

• Gene Tree
  Gm54266
  

Expression

• cDNA Data
  1

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  6

• Ensembl
  ENSMUSG00000120187 (Evidence)
• NCBI Gene
  118568702

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120187	Ensembl Gene Model | MGI Sequence Detail	1892	C57BL/6J
transcript	ENSMUST00000245898	Ensembl | MGI Sequence Detail	1790	Not Applicable
polypeptide	XP_036020528	RefSeq | MGI Sequence Detail	199	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54266:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr40091	Chr4:141391498-141391542 (+)	114 bp
Tssr40092	Chr4:141391552-141391560 (+)	150 bp