Gm54215 Gene Detail

Summary

• Symbol
  Gm54215
• Name
  predicted gene, 54215

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:6723453
  NCBI Gene: 118568644
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:42237193-42239373 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723453	protein coding gene	Chr4:42236859-42239373 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195003721	pseudogene	Chr4:39029997-39032369 (+)
AKR/J	ENSMUSG00220036621	pseudogene	Chr4:38856799-38859100 (+)
BALB/cJ	ENSMUSG00180028541	pseudogene	Chr4:38616816-38619188 (+)
C3H/HeJ	ENSMUSG00175024530	pseudogene	Chr4:38969706-38972078 (+)
C57BL/6NJ	ENSMUSG00215031115	pseudogene	Chr4:38709776-38712099 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005041	pseudogene	Chr4:38569911-38572234 (+)
CAST/EiJ	ENSTCUG00005005044	pseudogene	Chr4:38575653-38577979 (+)
CAST/EiJ	ENSTCUG00005005074	pseudogene	Chr4:38578526-38580852 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185006978	pseudogene	Chr4:38858332-38860663 (+)
DBA/2J	ENSMUSG00185006990	pseudogene	Chr4:38852589-38854912 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000031889	pseudogene	Chr4:39013581-39015954 (+)
JF1/MsJ	ENSUMUG00000032009	pseudogene	Chr4:39002471-39004845 (+)
JF1/MsJ	ENSUMUG00000031980	pseudogene	Chr4:38996820-38999194 (+)
LP/J	ENSMUSG00230042628	pseudogene	Chr4:42229559-42231882 (+)
NOD/ShiLtJ	ENSMUSG00190006455	pseudogene	Chr4:38718492-38720626 (-)
NZO/HlLtJ	ENSMUSG00225007366	pseudogene	Chr4:46118645-46120971 (+)
NZO/HlLtJ	ENSMUSG00225007363	pseudogene	Chr4:46112899-46115225 (+)
NZO/HlLtJ	ENSMUSG00225007359	pseudogene	Chr4:46104281-46106607 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm54215
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000073879 (Evidence)
• NCBI Gene
  118568644

Representative Sequences			Length	Strain/Species
genomic	118568644	NCBI Gene Model | MGI Sequence Detail	2181	C57BL/6J
transcript	XM_036164582	RefSeq | MGI Sequence Detail	2181	C57BL/6J
polypeptide	XP_036020475	RefSeq | MGI Sequence Detail	549	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;