Gm54112 Gene Detail

Summary

• Symbol
  Gm54112
• Name
  predicted gene, 54112

• Feature Type
  lncRNA gene
• IDs
  MGI:6723249
  NCBI Gene: 118568512
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:43085690-43086532 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  147 from dbSNP Build 142
• Strain Annotations
  30

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723249	lncRNA gene	Chr2:43085690-43086577 (+)
129S1/SvImJ	ENSMUSG00200048348	lncRNA gene	Chr2:40095735-40095737 (+)
129S1/SvImJ	ENSMUSG00200041205	lncRNA gene	Chr7:3039263-3039357 (-)
A/J	ENSMUSG00195040840	lncRNA gene	Chr2:40188086-40188088 (+)
A/J	ENSMUSG00195052037	lncRNA gene	Chr7:2890399-2890493 (-)
AKR/J	ENSMUSG00220045318	lncRNA gene	Chr2:40335695-40335697 (+)
AKR/J	ENSMUSG00220026612	lncRNA gene	Chr7:535497-535591 (-)
BALB/cJ	ENSMUSG00180049536	lncRNA gene	Chr2:40199221-40200115 (+)
C3H/HeJ	ENSMUSG00175044965	lncRNA gene	Chr2:40182557-40182559 (+)
C3H/HeJ	ENSMUSG00175047920	lncRNA gene	Chr7:2773697-2773791 (-)
C57BL/6NJ	ENSMUSG00215047059	lncRNA gene	Chr2:40238878-40239769 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017848	lncRNA gene	Chr2:39851704-39851706 (+)
CBA/J	ENSMUSG00210050167	lncRNA gene	Chr2:40236580-40236582 (+)
CBA/J	ENSMUSG00210047319	lncRNA gene	Chr7:2801853-2801947 (-)
DBA/2J	ENSMUSG00185043688	lncRNA gene	Chr7:3034153-3034247 (-)
DBA/2J	ENSMUSG00185048262	lncRNA gene	Chr2:40096802-40096804 (+)
FVB/NJ	ENSMUSG00205040769	lncRNA gene	Chr2:39890822-39891713 (+)
JF1/MsJ	ENSUMUG00000050660	lncRNA gene	Chr7:3121355-3121449 (-)
JF1/MsJ	ENSUMUG00000014144	lncRNA gene	Chr2:39898826-39898828 (+)
LP/J	ENSMUSG00230000820	lncRNA gene	Chr2:42015629-42015631 (+)
LP/J	ENSMUSG00230041784	lncRNA gene	Chr7:6044895-6044989 (-)
NOD/ShiLtJ	ENSMUSG00190041279	lncRNA gene	Chr2:40086542-40087431 (+)
NZO/HlLtJ	ENSMUSG00225050173	lncRNA gene	Chr2:49726539-49726541 (+)
NZO/HlLtJ	ENSMUSG00225022554	lncRNA gene	Chr7:3891520-3891614 (-)
PWK/PhJ	ENSLUMG00010044602	lncRNA gene	Chr2:40091855-40091857 (+)
PWK/PhJ	ENSLUMG00010049128	lncRNA gene	Chr7:6595418-6595512 (-)
SPRET/EiJ	ENSMSPG00010048383	lncRNA gene	Chr7:2605092-2605186 (-)
SPRET/EiJ	ENSMSPG00010010965	lncRNA gene	Chr2:40901012-40901014 (+)
WSB/EiJ	ENSIUOG00005052225	lncRNA gene	Chr7:2730979-2731073 (-)
WSB/EiJ	ENSIUOG00005041338	lncRNA gene	Chr2:40051033-40051035 (+)

Homology

• Gene Tree
  Gm54112
  

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  1

• Ensembl
  ENSMUSG00000121171 (Evidence)
• NCBI Gene
  118568512

Representative Sequences			Length	Strain/Species
genomic	118568512	NCBI Gene Model | MGI Sequence Detail	843	C57BL/6J
transcript	XR_004940925	RefSeq | MGI Sequence Detail	401	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54112:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17587	Chr2:43085688-43085731 (+)	20 bp