Gm54109 Gene Detail

Summary

• Symbol
  Gm54109
• Name
  predicted gene, 54109

• Feature Type
  lncRNA gene
• IDs
  MGI:6723243
  NCBI Gene: 118568506
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:29735002-29736500 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  78 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723243	lncRNA gene	Chr2:29735002-29741442 (-)
129S1/SvImJ	ENSMUSG00200053115	lncRNA gene	Chr2:26705223-26706712 (-)
A/J	ENSMUSG00195049635	lncRNA gene	Chr2:26798814-26800303 (-)
AKR/J	ENSMUSG00220053651	lncRNA gene	Chr2:26917357-26918846 (-)
BALB/cJ	ENSMUSG00180054428	lncRNA gene	Chr2:26818123-26819612 (-)
C3H/HeJ	ENSMUSG00175053916	lncRNA gene	Chr2:26787435-26788924 (-)
C57BL/6NJ	ENSMUSG00215049085	lncRNA gene	Chr2:26853066-26854556 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053506	lncRNA gene	Chr2:26523794-26525285 (-)
CBA/J	ENSMUSG00210018059	lncRNA gene	Chr2:26820596-26822085 (-)
DBA/2J	ENSMUSG00185053331	lncRNA gene	Chr2:26712891-26714380 (-)
FVB/NJ	ENSMUSG00205051244	lncRNA gene	Chr2:26564929-26566419 (-)
JF1/MsJ	ENSUMUG00000056427	lncRNA gene	Chr2:26609290-26610779 (-)
LP/J	ENSMUSG00230045261	lncRNA gene	Chr2:28640988-28642477 (-)
NOD/ShiLtJ	ENSMUSG00190053325	lncRNA gene	Chr2:26819731-26821220 (-)
NZO/HlLtJ	ENSMUSG00225010855	lncRNA gene	Chr2:36390241-36391732 (-)
PWK/PhJ	ENSLUMG00010052999	lncRNA gene	Chr2:26686274-26687762 (-)
SPRET/EiJ	ENSMSPG00010046819	lncRNA gene	Chr2:27409159-27410647 (-)
WSB/EiJ	ENSIUOG00005052768	lncRNA gene	Chr2:26671442-26672932 (-)

Homology

• Gene Tree
  Gm54109
  

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000120522 (Evidence)
• NCBI Gene
  118568506

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120522	Ensembl Gene Model | MGI Sequence Detail	1499	C57BL/6J
transcript	ENSMUST00000323734	Ensembl | MGI Sequence Detail	1321	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54109:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23339	Chr2:29736488-29736506 (-)	3 bp