Gm54095 Gene Detail

Summary

• Symbol
  Gm54095
• Name
  predicted gene, 54095

• Feature Type
  lncRNA gene
• IDs
  MGI:6723217
  NCBI Gene: 118568491
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:178136058-178137813 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  187 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723217	lncRNA gene	Chr2:178135802-178165648 (+)
129S1/SvImJ	ENSMUSG00200002536	lncRNA gene	Chr2:174160959-174162645 (+)
A/J	ENSMUSG00195001102	lncRNA gene	Chr2:174395267-174396975 (+)
AKR/J	ENSMUSG00220038283	lncRNA gene	Chr2:172074203-172075911 (+)
BALB/cJ	ENSMUSG00180000753	lncRNA gene	Chr2:172196686-172198394 (+)
C3H/HeJ	ENSMUSG00175004490	lncRNA gene	Chr2:173360896-173362602 (+)
C57BL/6NJ	ENSMUSG00215034664	lncRNA gene	Chr2:172295650-172297364 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005009396	lncRNA gene	Chr2:171651344-171653011 (+)
CBA/J	ENSMUSG00210001508	lncRNA gene	Chr2:172674805-172676513 (+)
DBA/2J	ENSMUSG00185021457	lncRNA gene	Chr2:173920266-173921972 (+)
FVB/NJ	ENSMUSG00205002452	lncRNA gene	Chr2:172720308-172722011 (+)
JF1/MsJ	ENSUMUG00000036119	lncRNA gene	Chr2:175085020-175086705 (+)
LP/J	ENSMUSG00230027207	lncRNA gene	Chr2:175812058-175813744 (+)
NOD/ShiLtJ	ENSMUSG00190016598	lncRNA gene	Chr2:172214665-172216368 (+)
NZO/HlLtJ	ENSMUSG00225007117	lncRNA gene	Chr2:183899726-183901432 (+)
PWK/PhJ	ENSLUMG00010039489	lncRNA gene	Chr2:172516693-172518380 (+)
SPRET/EiJ	ENSMSPG00010004139	lncRNA gene	Chr2:174996249-174997978 (+)
WSB/EiJ	ENSIUOG00005027033	lncRNA gene	Chr2:172249095-172250779 (+)

Homology

• Gene Tree
  Gm54095
  

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000120838 (Evidence)
• NCBI Gene
  118568491

Representative Sequences			Length	Strain/Species
genomic	118568491	NCBI Gene Model | MGI Sequence Detail	1756	C57BL/6J
transcript	XR_004940817	RefSeq | MGI Sequence Detail	530	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm54095:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr22182	Chr2:178136135-178136175 (+)	97 bp