Gm54030 Gene Detail

Summary

• Symbol
  Gm54030
• Name
  predicted gene, 54030

• Feature Type
  lncRNA gene
• IDs
  MGI:6723091
  NCBI Gene: 118568370
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:55039972-55061689 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  583 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6723091	lncRNA gene	Chr18:55024327-55061689 (+)
129S1/SvImJ	ENSMUSG00200033809	lncRNA gene	Chr18:52079567-52092091 (+)
A/J	ENSMUSG00195005718	lncRNA gene	Chr18:52227402-52239926 (+)
AKR/J	ENSMUSG00220016746	lncRNA gene	Chr18:52214703-52227219 (+)
BALB/cJ	ENSMUSG00180012447	lncRNA gene	Chr18:52795269-52807783 (+)
C3H/HeJ	ENSMUSG00175036318	lncRNA gene	Chr18:52409641-52422156 (+)
C57BL/6NJ	ENSMUSG00215039749	lncRNA gene	Chr18:51768206-51780714 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005028066	lncRNA gene	Chr18:51622126-51634712 (+)
CBA/J	ENSMUSG00210032780	lncRNA gene	Chr18:52339925-52352431 (+)
DBA/2J	ENSMUSG00185015710	lncRNA gene	Chr18:52259960-52272467 (+)
FVB/NJ	ENSMUSG00205017721	lncRNA gene	Chr18:51703708-51716229 (+)
JF1/MsJ	ENSUMUG00000037599	lncRNA gene	Chr18:52178944-52191524 (+)
LP/J	ENSMUSG00230011581	lncRNA gene	Chr18:54258767-54271295 (+)
NOD/ShiLtJ	ENSMUSG00190035828	lncRNA gene	Chr18:51972328-51984838 (+)
NZO/HlLtJ	ENSMUSG00225035392	lncRNA gene	Chr18:54160680-54173205 (+)
PWK/PhJ	ENSLUMG00010008568	lncRNA gene	Chr18:52313768-52326297 (+)
SPRET/EiJ	ENSMSPG00010018266	lncRNA gene	Chr18:52693398-52706000 (+)
WSB/EiJ	ENSIUOG00005009672	lncRNA gene	Chr18:51905145-51917657 (+)

Homology

• Gene Tree
  Gm54030
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm54030
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000120640 (Evidence)
• NCBI Gene
  118568370

Representative Sequences			Length	Strain/Species
genomic	118568370	NCBI Gene Model | MGI Sequence Detail	21718	C57BL/6J
transcript	XR_004939961	RefSeq | MGI Sequence Detail	11196	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67

TSS for Gm54030:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr151116	Chr18:55039961-55039995 (+)	6 bp