Gm53692 Gene Detail

Summary

• Symbol
  Gm53692
• Name
  predicted gene, 53692

• Feature Type
  lncRNA gene
• IDs
  MGI:6722429
  NCBI Gene: 118567924
• Alliance
  genome feature page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr11:83539156-83540238 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722429	lncRNA gene	Chr11:83501924-83541209 (+)
129S1/SvImJ	ENSMUSG00200051897	lncRNA gene	Chr11:80667336-80669220 (+)
A/J	ENSMUSG00195047061	lncRNA gene	Chr11:80521781-80523665 (+)
AKR/J	ENSMUSG00220048502	lncRNA gene	Chr11:80737245-80739128 (+)
BALB/cJ	ENSMUSG00180042679	lncRNA gene	Chr11:80729046-80730926 (+)
C3H/HeJ	ENSMUSG00175040947	lncRNA gene	Chr11:80668814-80670698 (+)
C57BL/6NJ	ENSMUSG00215042384	lncRNA gene	Chr11:80312705-80314585 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046154	lncRNA gene	Chr11:80186294-80188176 (+)
CBA/J	ENSMUSG00210048223	lncRNA gene	Chr11:80486432-80488316 (+)
DBA/2J	ENSMUSG00185040564	lncRNA gene	Chr11:80821947-80823830 (+)
FVB/NJ	ENSMUSG00205047508	lncRNA gene	Chr11:80616635-80618515 (+)
JF1/MsJ	ENSUMUG00000028133	lncRNA gene	Chr11:81130946-81132826 (+)
LP/J	ENSMUSG00230029908	lncRNA gene	Chr11:81836554-81838438 (+)
NOD/ShiLtJ	ENSMUSG00190047086	lncRNA gene	Chr11:80828957-80830837 (+)
NZO/HlLtJ	ENSMUSG00225040067	lncRNA gene	Chr11:83963035-83964914 (+)
PWK/PhJ	ENSLUMG00010025477	lncRNA gene	Chr11:80645548-80647429 (+)
SPRET/EiJ	ENSMSPG00010043924	lncRNA gene	Chr11:81038738-81040618 (+)
SPRET/EiJ	ENSMSPG00010045613	lncRNA gene	Chr11:81150026-81151875 (-)
WSB/EiJ	ENSIUOG00005037159	lncRNA gene	Chr11:80637877-80639757 (+)

Homology

• Gene Tree
  Gm53692
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Transgenic
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000120024 (Evidence)
• NCBI Gene
  118567924

Representative Sequences			Length	Strain/Species
genomic	118567924	NCBI Gene Model | MGI Sequence Detail	1083	C57BL/6J
transcript	XR_004937230	RefSeq | MGI Sequence Detail	900	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:287321 Seo W, et al., Runx-mediated regulation of CCL5 via antagonizing two enhancers influences immune cell function and anti-tumor immunity. Nat Commun. 2020 Mar 26;11(1):1562

TSS for Gm53692:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103722	Chr11:83538954-83538968 (+)	-195 bp
Tssr103723	Chr11:83538983-83538988 (+)	-170 bp
Tssr103724	Chr11:83539008-83539035 (+)	-134 bp
Tssr103725	Chr11:83539043-83539048 (+)	-110 bp
Tssr103726	Chr11:83539054-83539065 (+)	-96 bp
Tssr103727	Chr11:83539354-83539357 (+)	200 bp
Tssr103728	Chr11:83539367-83539370 (+)	213 bp
Tssr103729	Chr11:83539406-83539417 (+)	256 bp
Tssr103730	Chr11:83539427-83539432 (+)	274 bp
Tssr103731	Chr11:83539458-83539474 (+)	310 bp