Gm53692 Gene Detail

Summary

• Symbol
  Gm53692
• Name
  predicted gene, 53692

• Feature Type
  lncRNA gene
• IDs
  MGI:6722429
  NCBI Gene: 118567924
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr11:83539156-83540238 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  55 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722429	lncRNA gene	Chr11:83539156-83541209 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm53692
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Transgenic
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  7
• RefSeq
  1

• Ensembl
  ENSMUSG00000120024 (Evidence)
• NCBI Gene
  118567924

Representative Sequences			Length	Strain/Species
genomic	118567924	NCBI Gene Model | MGI Sequence Detail	1083	C57BL/6J
transcript	XR_004937230	RefSeq | MGI Sequence Detail	900	C57BL/6J

References

• Summaries
  All 4

  Phenotypes 1
• Earliest
  J:287321 Seo W, et al., Runx-mediated regulation of CCL5 via antagonizing two enhancers influences immune cell function and anti-tumor immunity. Nat Commun. 2020 Mar 26;11(1):1562

TSS for Gm53692:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103722	Chr11:83538954-83538968 (+)	-195 bp
Tssr103723	Chr11:83538983-83538988 (+)	-170 bp
Tssr103724	Chr11:83539008-83539035 (+)	-134 bp
Tssr103725	Chr11:83539043-83539048 (+)	-110 bp
Tssr103726	Chr11:83539054-83539065 (+)	-96 bp
Tssr103727	Chr11:83539354-83539357 (+)	200 bp
Tssr103728	Chr11:83539367-83539370 (+)	213 bp
Tssr103729	Chr11:83539406-83539417 (+)	256 bp
Tssr103730	Chr11:83539427-83539432 (+)	274 bp
Tssr103731	Chr11:83539458-83539474 (+)	310 bp