Gm53681 Gene Detail

Summary

• Symbol
  Gm53681
• Name
  predicted gene, 53681

• Feature Type
  lncRNA gene
• IDs
  MGI:6722407
  NCBI Gene: 118567909
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr11:34674089-34688050 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  548 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722407	lncRNA gene	Chr11:34674067-34688441 (+)
129S1/SvImJ	ENSMUSG00200007380	lncRNA gene	Chr11:31720307-31733991 (+)
A/J	ENSMUSG00195007295	lncRNA gene	Chr11:31647342-31664801 (+)
AKR/J	ENSMUSG00220003407	lncRNA gene	Chr11:31833309-31850765 (+)
BALB/cJ	ENSMUSG00180001810	lncRNA gene	Chr11:31648451-31665909 (+)
C3H/HeJ	ENSMUSG00175003825	lncRNA gene	Chr11:31624893-31638575 (+)
C57BL/6NJ	ENSMUSG00215010514	lncRNA gene	Chr11:31573803-31587483 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005029986	lncRNA gene	Chr11:31494595-31507963 (+)
CBA/J	ENSMUSG00210006932	lncRNA gene	Chr11:31504359-31521817 (+)
DBA/2J	ENSMUSG00185010648	lncRNA gene	Chr11:31704131-31717811 (+)
FVB/NJ	ENSMUSG00205012236	lncRNA gene	Chr11:31734707-31748374 (+)
JF1/MsJ	ENSUMUG00000005186	lncRNA gene	Chr11:32025808-32039178 (+)
LP/J	ENSMUSG00230003881	lncRNA gene	Chr11:32868883-32886338 (+)
NOD/ShiLtJ	ENSMUSG00190007439	lncRNA gene	Chr11:31775985-31789353 (+)
NZO/HlLtJ	ENSMUSG00225030968	lncRNA gene	Chr11:34818516-34831882 (+)
PWK/PhJ	ENSLUMG00010017651	lncRNA gene	Chr11:31598196-31611686 (+)
SPRET/EiJ	ENSMSPG00010002271	lncRNA gene	Chr11:31983920-31997546 (+)
WSB/EiJ	ENSIUOG00005002132	lncRNA gene	Chr11:31669592-31683284 (+)

Homology

• Gene Tree
  Gm53681
  

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000120384 (Evidence)
• NCBI Gene
  118567909

Representative Sequences			Length	Strain/Species
genomic	118567909	NCBI Gene Model | MGI Sequence Detail	13962	C57BL/6J
transcript	XR_004937177	RefSeq | MGI Sequence Detail	1143	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53681:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100927	Chr11:34674081-34674118 (+)	11 bp
Tssr100928	Chr11:34674784-34674817 (+)	712 bp