Gm53660 Gene Detail

Summary

• Symbol
  Gm53660
• Name
  predicted gene, 53660

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:6722365
  NCBI Gene: 118567886
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:121834212-121847592 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  486 from dbSNP Build 142
• Strain Annotations
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722365	protein coding gene	Chr11:121795182-121847677 (-)
129S1/SvImJ	ENSMUSG00200052622	lncRNA gene	Chr11:119229915-119247494 (-)
A/J	ENSMUSG00195032907	lncRNA gene	Chr11:118856647-118887537 (-)
AKR/J	ENSMUSG00220031819	lncRNA gene	Chr11:119006987-119037910 (-)
BALB/cJ	ENSMUSG00180052625	lncRNA gene	Chr11:119142580-119160028 (-)
C3H/HeJ	ENSMUSG00175048212	lncRNA gene	Chr11:119089078-119106513 (-)
C57BL/6NJ	ENSMUSG00215046645	lncRNA gene	Chr11:118677090-118708003 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036158	lncRNA gene	Chr11:118517940-118548909 (-)
CBA/J	ENSMUSG00210050944	lncRNA gene	Chr11:118821046-118851953 (-)
DBA/2J	ENSMUSG00185027152	lncRNA gene	Chr11:119134194-119165100 (-)
DBA/2J	ENSMUSG00185022095	protein coding gene	Chr11:119149869-119165080 (-)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000054982	lncRNA gene	Chr11:119426802-119459217 (-)
LP/J	ENSMUSG00230046798	protein coding gene	Chr11:120211360-120226559 (-)
LP/J	ENSMUSG00230050999	lncRNA gene	Chr11:120195692-120226592 (-)
NOD/ShiLtJ	ENSMUSG00190050524	lncRNA gene	Chr11:119205396-119236292 (-)
NZO/HlLtJ	ENSMUSG00225026689	protein coding gene	Chr11:122388349-122403554 (-)
NZO/HlLtJ	ENSMUSG00225026756	lncRNA gene	Chr11:122372742-122403574 (-)
PWK/PhJ	ENSLUMG00010025158	lncRNA gene	Chr11:118921168-118952213 (-)
SPRET/EiJ	ENSMSPG00010044003	lncRNA gene	Chr11:119630447-119666118 (-)
WSB/EiJ	ENSIUOG00005049360	lncRNA gene	Chr11:118944367-118975237 (-)

Homology

• Gene Tree
  Gm53660
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  91
• Gene trapped
  91
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  52
• RefSeq
  4

• Ensembl
  ENSMUSG00000120449 (Evidence)
• NCBI Gene
  118567886

Representative Sequences			Length	Strain/Species
genomic	118567886	NCBI Gene Model | MGI Sequence Detail	13381	C57BL/6J
transcript	NM_001428268	RefSeq | MGI Sequence Detail	2737	C57BL/6
polypeptide	NP_001415197	RefSeq | MGI Sequence Detail	644	C57BL/6

References

• Summaries
  All 7

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm53660:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr112473	Chr11:121847546-121847559 (-)	39 bp