Gm53618 Gene Detail

Summary

• Symbol
  Gm53618
• Name
  predicted gene, 53618

• Feature Type
  lncRNA gene
• IDs
  MGI:6722281
  NCBI Gene: 118567831
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:21540844-21557359 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  695 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722281	lncRNA gene	Chr10:21540831-21560162 (+)
129S1/SvImJ	ENSMUSG00200011425	lncRNA gene	Chr10:18534478-18535273 (+)
A/J	ENSMUSG00195007244	lncRNA gene	Chr10:18546629-18547424 (+)
AKR/J	ENSMUSG00220010383	lncRNA gene	Chr10:18449393-18450187 (+)
BALB/cJ	ENSMUSG00180015904	lncRNA gene	Chr10:18670856-18671651 (+)
C3H/HeJ	ENSMUSG00175020796	lncRNA gene	Chr10:18693316-18694111 (+)
C57BL/6NJ	ENSMUSG00215003929	lncRNA gene	Chr10:18500436-18501231 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030599	lncRNA gene	Chr10:18449055-18449850 (+)
CBA/J	ENSMUSG00210015570	lncRNA gene	Chr10:18630402-18631197 (+)
DBA/2J	ENSMUSG00185007281	lncRNA gene	Chr10:18615402-18616197 (+)
FVB/NJ	ENSMUSG00205020825	lncRNA gene	Chr10:18527747-18528542 (+)
JF1/MsJ	ENSUMUG00000014921	lncRNA gene	Chr10:18668576-18669370 (+)
LP/J	ENSMUSG00230011666	lncRNA gene	Chr10:20268475-20269270 (+)
NOD/ShiLtJ	ENSMUSG00190010822	lncRNA gene	Chr10:18605697-18606492 (+)
NZO/HlLtJ	ENSMUSG00225030396	lncRNA gene	Chr10:24755630-24756425 (+)
PWK/PhJ	ENSLUMG00010015523	lncRNA gene	Chr10:18437284-18438078 (+)
SPRET/EiJ	ENSMSPG00010011158	lncRNA gene	Chr10:19068559-19069359 (+)
WSB/EiJ	ENSIUOG00005023497	lncRNA gene	Chr10:18241863-18242657 (+)

Homology

• Gene Tree
  Gm53618
  

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000120421 (Evidence)
• NCBI Gene
  118567831

Representative Sequences			Length	Strain/Species
genomic	118567831	NCBI Gene Model | MGI Sequence Detail	16516	C57BL/6J
transcript	XR_004936468	RefSeq | MGI Sequence Detail	2750	C57BL/6J

Other
Accession IDs

MGI:7337813

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53618:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92647	Chr10:21545115-21545125 (+)	4,276 bp