Gm53617 Gene Detail

Summary

• Symbol
  Gm53617
• Name
  predicted gene, 53617

• Feature Type
  lncRNA gene
• IDs
  MGI:6722279
  NCBI Gene: 118567830
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:20742228-20767753 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  865 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722279	lncRNA gene	Chr10:20695366-20767753 (-)
129S1/SvImJ	ENSMUSG00200010545	lncRNA gene	Chr10:17733656-17758533 (-)
A/J	ENSMUSG00195006908	lncRNA gene	Chr10:17745722-17770599 (-)
AKR/J	ENSMUSG00220010267	lncRNA gene	Chr10:17655047-17679978 (-)
BALB/cJ	ENSMUSG00180015026	lncRNA gene	Chr10:17869975-17894846 (-)
C3H/HeJ	ENSMUSG00175021325	lncRNA gene	Chr10:17889735-17915183 (-)
C57BL/6NJ	ENSMUSG00215003676	lncRNA gene	Chr10:17696815-17722262 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030082	lncRNA gene	Chr10:17660800-17686120 (-)
CBA/J	ENSMUSG00210015937	lncRNA gene	Chr10:17826838-17852285 (-)
DBA/2J	ENSMUSG00185007772	lncRNA gene	Chr10:17811841-17837290 (-)
FVB/NJ	ENSMUSG00205019292	lncRNA gene	Chr10:17726951-17751836 (-)
JF1/MsJ	ENSUMUG00000013115	lncRNA gene	Chr10:17866359-17891100 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190010878	lncRNA gene	Chr10:17804892-17829773 (-)
NZO/HlLtJ	ENSMUSG00225030565	lncRNA gene	Chr10:23952869-23978316 (-)
PWK/PhJ	ENSLUMG00010015307	lncRNA gene	Chr10:17638612-17666366 (-)
SPRET/EiJ	ENSMSPG00010011323	lncRNA gene	Chr10:18255571-18296110 (-)
WSB/EiJ	ENSIUOG00005024019	lncRNA gene	Chr10:17437953-17462877 (-)

Homology

• Gene Tree
  Gm53617
  

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000120178 (Evidence)
• NCBI Gene
  118567830

Representative Sequences			Length	Strain/Species
genomic	118567830	NCBI Gene Model | MGI Sequence Detail	25526	C57BL/6J
transcript	XR_004936467	RefSeq | MGI Sequence Detail	1335	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53617:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr96974	Chr10:20767414-20767454 (-)	319 bp