Gm53610 Gene Detail

Summary

• Symbol
  Gm53610
• Name
  predicted gene, 53610

• Feature Type
  lncRNA gene
• IDs
  MGI:6722265
  NCBI Gene: 118567819
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:7162289-7168736 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  299 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722265	lncRNA gene	Chr10:7159126-7168736 (+)
129S1/SvImJ	ENSMUSG00200011273	lncRNA gene	Chr10:4169637-4172479 (+)
A/J	ENSMUSG00195010496	lncRNA gene	Chr10:4126359-4129201 (+)
AKR/J	ENSMUSG00220007779	lncRNA gene	Chr10:4176710-4179552 (+)
BALB/cJ	ENSMUSG00180024237	lncRNA gene	Chr10:4220495-4223337 (+)
C3H/HeJ	ENSMUSG00175013501	lncRNA gene	Chr10:4222311-4225142 (+)
C57BL/6NJ	ENSMUSG00215005200	lncRNA gene	Chr10:4100340-4103183 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005018171	lncRNA gene	Chr10:4183050-4185869 (+)
CBA/J	ENSMUSG00210012684	lncRNA gene	Chr10:4168105-4170936 (+)
DBA/2J	ENSMUSG00185010969	lncRNA gene	Chr10:4214502-4217333 (+)
FVB/NJ	ENSMUSG00205008562	lncRNA gene	Chr10:4167540-4170371 (+)
JF1/MsJ	ENSUMUG00000036932	lncRNA gene	Chr10:4267098-4269921 (+)
LP/J	ENSMUSG00230017348	lncRNA gene	Chr10:5819456-5822298 (+)
NOD/ShiLtJ	ENSMUSG00190027027	lncRNA gene	Chr10:4136492-4139323 (+)
NZO/HlLtJ	ENSMUSG00225016617	lncRNA gene	Chr10:10339122-10341953 (+)
PWK/PhJ	ENSLUMG00010021049	lncRNA gene	Chr10:4122010-4124833 (+)
SPRET/EiJ	ENSMSPG00010007049	lncRNA gene	Chr10:4496374-4499210 (+)
WSB/EiJ	ENSIUOG00005014263	lncRNA gene	Chr10:4175666-4178497 (+)

Homology

• Gene Tree
  Gm53610
  

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000119990 (Evidence)
• NCBI Gene
  118567819

Representative Sequences			Length	Strain/Species
genomic	118567819	NCBI Gene Model | MGI Sequence Detail	6448	C57BL/6J
transcript	XR_004936444	RefSeq | MGI Sequence Detail	4064	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53610:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92296	Chr10:7162293-7162331 (+)	23 bp
Tssr92297	Chr10:7162334-7162362 (+)	59 bp
Tssr92298	Chr10:7162380-7162390 (+)	96 bp