Gm53533 Gene Detail

Summary

• Symbol
  Gm53533
• Name
  predicted gene, 53533

• Feature Type
  lncRNA gene
• IDs
  MGI:6722118
  NCBI Gene: 118567713
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr9:62568156-62573680 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  283 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6722118	lncRNA gene	Chr9:62562175-62573712 (-)
129S1/SvImJ	ENSMUSG00200036173	lncRNA gene	Chr9:59674849-59680055 (-)
A/J	ENSMUSG00195042940	lncRNA gene	Chr9:59383870-59389095 (-)
AKR/J	ENSMUSG00220032919	lncRNA gene	Chr9:59533295-59538514 (-)
BALB/cJ	ENSMUSG00180019787	lncRNA gene	Chr9:59516921-59522129 (-)
C3H/HeJ	ENSMUSG00175022835	lncRNA gene	Chr9:59517011-59522236 (-)
C57BL/6NJ	ENSMUSG00215035668	lncRNA gene	Chr9:59504101-59509308 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021458	lncRNA gene	Chr9:59428508-59433728 (-)
CBA/J	ENSMUSG00210043335	lncRNA gene	Chr9:59606287-59611493 (-)
DBA/2J	ENSMUSG00185044136	lncRNA gene	Chr9:59629492-59634698 (-)
FVB/NJ	ENSMUSG00205044815	lncRNA gene	Chr9:59954276-59959500 (-)
JF1/MsJ	ENSUMUG00000049510	lncRNA gene	Chr9:59675855-59681076 (-)
LP/J	ENSMUSG00230039690	lncRNA gene	Chr9:59874121-59879327 (-)
NOD/ShiLtJ	ENSMUSG00190045253	lncRNA gene	Chr9:59713480-59718705 (-)
NZO/HlLtJ	ENSMUSG00225028581	lncRNA gene	Chr9:59939839-59945064 (-)
PWK/PhJ	ENSLUMG00010039832	lncRNA gene	Chr9:59642240-59647460 (-)
SPRET/EiJ	ENSMSPG00010027815	lncRNA gene	Chr9:60706171-60711361 (-)
WSB/EiJ	ENSIUOG00005041579	lncRNA gene	Chr9:59120872-59126101 (-)

Homology

• Gene Tree
  Gm53533
  

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000120158 (Evidence)
• NCBI Gene
  118567713

Representative Sequences			Length	Strain/Species
genomic	118567713	NCBI Gene Model | MGI Sequence Detail	5525	C57BL/6J
transcript	XR_004935811	RefSeq | MGI Sequence Detail	762	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53533:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr90063	Chr9:62573363-62573370 (-)	313 bp
Tssr90062	Chr9:62573352-62573359 (-)	324 bp
Tssr90061	Chr9:62573345-62573351 (-)	332 bp
Tssr90060	Chr9:62573328-62573344 (-)	344 bp
Tssr90059	Chr9:62573310-62573325 (-)	362 bp