Gm53435 Gene Detail

Summary

• Symbol
  Gm53435
• Name
  predicted gene, 53435

• Feature Type
  lncRNA gene
• IDs
  MGI:6721924
  NCBI Gene: 118567586
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:61914502-61933616 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  906 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6721924	lncRNA gene	Chr8:61850446-61933616 (-)
129S1/SvImJ	ENSMUSG00200007879	lncRNA gene	Chr8:56721900-56741558 (-)
A/J	ENSMUSG00195012231	lncRNA gene	Chr8:57085972-57106480 (-)
AKR/J	ENSMUSG00220006539	lncRNA gene	Chr8:56908970-56928626 (-)
BALB/cJ	ENSMUSG00180014400	lncRNA gene	Chr8:56707295-56726953 (-)
C3H/HeJ	ENSMUSG00175008138	lncRNA gene	Chr8:56911766-56931425 (-)
C57BL/6NJ	ENSMUSG00215010926	lncRNA gene	Chr8:56733817-56753475 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006691	lncRNA gene	Chr8:56581313-56600945 (-)
CBA/J	ENSMUSG00210009583	lncRNA gene	Chr8:56813560-56833218 (-)
DBA/2J	ENSMUSG00185023076	lncRNA gene	Chr8:62866812-62886471 (-)
FVB/NJ	ENSMUSG00205013232	lncRNA gene	Chr8:56134069-56153722 (-)
JF1/MsJ	ENSUMUG00000016321	lncRNA gene	Chr8:65161768-65182745 (-)
LP/J	ENSMUSG00230006847	lncRNA gene	Chr8:66525138-66544795 (-)
NOD/ShiLtJ	ENSMUSG00190009880	lncRNA gene	Chr8:56689327-56709834 (-)
NZO/HlLtJ	ENSMUSG00225031031	lncRNA gene	Chr8:69961384-69980991 (-)
PWK/PhJ	ENSLUMG00010013095	lncRNA gene	Chr8:56587149-56608084 (-)
SPRET/EiJ	ENSMSPG00010015339	lncRNA gene	Chr8:57788643-57810000 (-)
WSB/EiJ	ENSIUOG00005017429	lncRNA gene	Chr8:57612686-57632294 (-)

Homology

• Gene Tree
  Gm53435
  

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1

• Ensembl
  ENSMUSG00000119995 (Evidence)
• NCBI Gene
  118567586

Representative Sequences			Length	Strain/Species
genomic	118567586	NCBI Gene Model | MGI Sequence Detail	19115	C57BL/6J
transcript	XR_004935024	RefSeq | MGI Sequence Detail	631	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53435:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81374	Chr8:61933529-61933556 (-)	73 bp