Gm53367 Gene Detail

Summary

• Symbol
  Gm53367
• Name
  predicted gene, 53367

• Feature Type
  lncRNA gene
• IDs
  MGI:6721796
  NCBI Gene: 118567499
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:115062912-115065577 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  123 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6721796	lncRNA gene	Chr7:115062861-115065577 (+)
129S1/SvImJ	ENSMUSG00200034637	lncRNA gene	Chr7:101613757-101614788 (+)
A/J	ENSMUSG00195040798	lncRNA gene	Chr7:106110762-106111793 (+)
AKR/J	ENSMUSG00220041214	lncRNA gene	Chr7:99520260-99521291 (+)
BALB/cJ	ENSMUSG00180034407	lncRNA gene	Chr7:102768938-102769969 (+)
C3H/HeJ	ENSMUSG00175027359	lncRNA gene	Chr7:103403745-103404776 (+)
C57BL/6NJ	ENSMUSG00215042206	lncRNA gene	Chr7:102728338-102729369 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044661	lncRNA gene	Chr7:106081480-106082553 (+)
CBA/J	ENSMUSG00210025111	lncRNA gene	Chr7:103230398-103231429 (+)
DBA/2J	ENSMUSG00185022719	lncRNA gene	Chr7:107580838-107581869 (+)
FVB/NJ	ENSMUSG00205050120	lncRNA gene	Chr7:103191564-103192595 (+)
JF1/MsJ	ENSUMUG00000052563	lncRNA gene	Chr7:112644083-112645114 (+)
LP/J	ENSMUSG00230038543	lncRNA gene	Chr7:113699897-113700928 (+)
NOD/ShiLtJ	ENSMUSG00190029328	lncRNA gene	Chr7:103400244-103401275 (+)
NZO/HlLtJ	ENSMUSG00225040273	lncRNA gene	Chr7:111923474-111924505 (+)
PWK/PhJ	ENSLUMG00010043874	lncRNA gene	Chr7:101796295-101797326 (+)
SPRET/EiJ	ENSMSPG00010010169	lncRNA gene	Chr7:103000277-103001297 (+)
WSB/EiJ	ENSIUOG00005012768	lncRNA gene	Chr7:104057847-104058878 (+)

Homology

• Gene Tree
  Gm53367
  

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000120780 (Evidence)
• NCBI Gene
  118567499

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120780	Ensembl Gene Model | MGI Sequence Detail	2666	C57BL/6J
transcript	ENSMUST00000245776	Ensembl | MGI Sequence Detail	1032	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53367:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68684	Chr7:115064577-115064583 (+)	1,668 bp