Gm53240 Gene Detail

Summary

• Symbol
  Gm53240
• Name
  predicted gene, 53240

• Feature Type
  lncRNA gene
• IDs
  MGI:6721555
  NCBI Gene: 115489517
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:59428925-59432570 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  192 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6721555	lncRNA gene	Chr2:59428879-59442033 (+)
129S1/SvImJ	ENSMUSG00200003178	lncRNA gene	Chr2:56494472-56507758 (+)
A/J	ENSMUSG00195005266	lncRNA gene	Chr2:56614959-56627953 (+)
AKR/J	ENSMUSG00220007459	lncRNA gene	Chr2:56716896-56729888 (+)
BALB/cJ	ENSMUSG00180020783	lncRNA gene	Chr2:56571235-56584228 (+)
C3H/HeJ	ENSMUSG00175014009	lncRNA gene	Chr2:56639866-56652856 (+)
C57BL/6NJ	ENSMUSG00215009486	lncRNA gene	Chr2:56624641-56637635 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022972	lncRNA gene	Chr2:55978127-55991059 (+)
CBA/J	ENSMUSG00210034973	lncRNA gene	Chr2:56659204-56672195 (+)
DBA/2J	ENSMUSG00185008412	lncRNA gene	Chr2:56515253-56528245 (+)
FVB/NJ	ENSMUSG00205021681	lncRNA gene	Chr2:56156041-56169034 (+)
JF1/MsJ	ENSUMUG00000023736	lncRNA gene	Chr2:56215857-56229118 (+)
LP/J	ENSMUSG00230001710	lncRNA gene	Chr2:58378246-58391531 (+)
NOD/ShiLtJ	ENSMUSG00190045431	lncRNA gene	Chr2:56600313-56613304 (+)
NZO/HlLtJ	ENSMUSG00225001060	lncRNA gene	Chr2:66103933-66116924 (+)
PWK/PhJ	ENSLUMG00010005669	lncRNA gene	Chr2:56368757-56382020 (+)
SPRET/EiJ	ENSMSPG00010011951	lncRNA gene	Chr2:57546138-57559132 (+)
WSB/EiJ	ENSIUOG00005028638	lncRNA gene	Chr2:56641505-56654515 (+)

Homology

• Gene Tree
  Gm53240
  

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  1

• Ensembl
  ENSMUSG00000120727 (Evidence)
• NCBI Gene
  115489517

Representative Sequences			Length	Strain/Species
genomic	115489517	NCBI Gene Model | MGI Sequence Detail	3646	C57BL/6J
transcript	XR_003954038	RefSeq | MGI Sequence Detail	514	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53240:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr17860	Chr2:59428906-59428942 (+)	-1 bp