Gm53065 Gene Detail

Summary

• Symbol
  Gm53065
• Name
  predicted gene 53065

• Feature Type
  lncRNA gene
• IDs
  MGI:6436715
  NCBI Gene: 118126071
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:52552438-52621832 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  1922 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6436715	lncRNA gene	Chr1:52543395-52626565 (+)
129S1/SvImJ	ENSMUSG00200002226	lncRNA gene	Chr1:50036875-50096670 (+)
A/J	ENSMUSG00195002104	lncRNA gene	Chr1:49936698-49996513 (+)
AKR/J	ENSMUSG00220003867	lncRNA gene	Chr1:49694202-49753844 (+)
BALB/cJ	ENSMUSG00180003213	lncRNA gene	Chr1:49869821-49929465 (+)
C3H/HeJ	ENSMUSG00175000158	lncRNA gene	Chr1:49962957-50022759 (+)
C57BL/6NJ	ENSMUSG00215003071	lncRNA gene	Chr1:49890158-49949935 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004366	lincRNA gene	Chr1:41508589-41571150 (-)
CAST/EiJ	ENSTCUG00005000877	lncRNA gene	Chr1:49797263-49857481 (+)
CBA/J	ENSMUSG00210029575	lncRNA gene	Chr1:49668072-49727859 (+)
DBA/2J	ENSMUSG00185030338	lncRNA gene	Chr1:50787701-50847489 (+)
FVB/NJ	ENSMUSG00205004043	lncRNA gene	Chr1:49607207-49666993 (+)
JF1/MsJ	ENSUMUG00000002717	lncRNA gene	Chr1:49764756-49825192 (+)
LP/J	ENSMUSG00230001112	lncRNA gene	Chr1:50783244-50843754 (+)
NOD/ShiLtJ	ENSMUSG00190002825	lncRNA gene	Chr1:49805212-49864809 (+)
NZO/HlLtJ	ENSMUSG00225010224	lncRNA gene	Chr1:53961269-54020896 (+)
PWK/PhJ	ENSLUMG00010002911	lncRNA gene	Chr1:49325889-49386243 (+)
SPRET/EiJ	ENSMSPG00010013831	lncRNA gene	Chr1:51011381-51068526 (+)
WSB/EiJ	ENSIUOG00005003666	lncRNA gene	Chr1:49502935-49566411 (+)

Homology

• Gene Tree
  Gm53065
  

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  95
• RefSeq
  1

• Ensembl
  ENSMUSG00000100120 (Evidence)
• NCBI Gene
  118126071

Representative Sequences			Length	Strain/Species
genomic	118126071	NCBI Gene Model | MGI Sequence Detail	69395	C57BL/6J
transcript	NR_169309	RefSeq | MGI Sequence Detail	706	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm53065:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6676	Chr1:52607635-52607646 (+)	55,203 bp
Tssr6677	Chr1:52607654-52607663 (+)	55,221 bp