Gm53065 Gene Detail

Summary

• Symbol
  Gm53065
• Name
  predicted gene 53065

• Feature Type
  lncRNA gene
• IDs
  MGI:6436715
  NCBI Gene: 118126071
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:52562061-52621838 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  373 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6436715	lncRNA gene	Chr1:52552438-52621838 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004831	lincRNA gene	Chr1:52035327-52099354 (+)
A/J	MGP_AJ_G0004812	lincRNA gene	Chr1:50288479-50351056 (+)
AKR/J	MGP_AKRJ_G0004791	lincRNA gene	Chr1:51361965-51424758 (+)
BALB/cJ	MGP_BALBcJ_G0004794	lincRNA gene	Chr1:50113120-50173164 (+)
C3H/HeJ	MGP_C3HHeJ_G0004742	lincRNA gene	Chr1:51758769-51822645 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004944	lincRNA gene	Chr1:54228505-54291587 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004366	lincRNA gene	Chr1:41508589-41571150 (-)
CAST/EiJ	MGP_CASTEiJ_G0004696	lincRNA gene	Chr1:51252961-51319175 (+)
CBA/J	MGP_CBAJ_G0004735	lincRNA gene	Chr1:55663877-55726919 (+)
DBA/2J	MGP_DBA2J_G0004753	lincRNA gene	Chr1:49558141-49618532 (+)
FVB/NJ	MGP_FVBNJ_G0004773	lincRNA gene	Chr1:49020466-49084521 (+)
LP/J	MGP_LPJ_G0004832	lincRNA gene	Chr1:52517400-52581003 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004757	lincRNA gene	Chr1:58722279-58785676 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004948	lincRNA gene	Chr1:51479616-51545432 (+)
PWK/PhJ	MGP_PWKPhJ_G0004649	lincRNA gene	Chr1:49420704-49482713 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004575	lincRNA gene	Chr1:51146558-51207593 (+)
WSB/EiJ	MGP_WSBEiJ_G0004740	lincRNA gene	Chr1:51297814-51366817 (+)

Homology

• Gene Tree
  Gm53065
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000100120 (Evidence)
• NCBI Gene
  118126071

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100120	Ensembl Gene Model | MGI Sequence Detail	59778	C57BL/6J
transcript	ENSMUST00000189527	Ensembl | MGI Sequence Detail	701	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53065:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6676	Chr1:52607635-52607646 (+)	45,580 bp
Tssr6677	Chr1:52607654-52607663 (+)	45,598 bp