Gm53058 Gene Detail

Summary

• Symbol
  Gm53058
• Name
  predicted gene 53058

• Feature Type
  lncRNA gene
• IDs
  MGI:6435685
  NCBI Gene: 118027462
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr16:13265816-13285094 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic

Strain
Comparison

• SNPs within 2kb
  511 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6435685	lncRNA gene	Chr16:13265280-13292725 (+)
129S1/SvImJ	ENSMUSG00200011962	lncRNA gene	Chr16:10247587-10266930 (+)
A/J	ENSMUSG00195011804	lncRNA gene	Chr16:9812650-9831997 (+)
AKR/J	ENSMUSG00220017416	lncRNA gene	Chr16:10109523-10128866 (+)
BALB/cJ	ENSMUSG00180008703	lncRNA gene	Chr16:10049955-10069300 (+)
C3H/HeJ	ENSMUSG00175029888	lncRNA gene	Chr16:10209935-10229331 (+)
C57BL/6NJ	ENSMUSG00215024736	lncRNA gene	Chr16:9929623-9948966 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032573	lncRNA gene	Chr16:10114274-10133743 (+)
CBA/J	ENSMUSG00210012172	lncRNA gene	Chr16:10226890-10246286 (+)
DBA/2J	ENSMUSG00185010630	lncRNA gene	Chr16:10172435-10191828 (+)
FVB/NJ	ENSMUSG00205012780	lncRNA gene	Chr16:10164404-10183747 (+)
JF1/MsJ	ENSUMUG00000054986	lncRNA gene	Chr16:10277482-10296910 (+)
LP/J	ENSMUSG00230046688	lncRNA gene	Chr16:12743164-12762507 (+)
NOD/ShiLtJ	ENSMUSG00190049098	lncRNA gene	Chr16:10304359-10323702 (+)
NZO/HlLtJ	ENSMUSG00225032416	lncRNA gene	Chr16:15988289-16007632 (+)
PWK/PhJ	ENSLUMG00010017914	lncRNA gene	Chr16:10155696-10175443 (+)
SPRET/EiJ	ENSMSPG00010017991	lncRNA gene	Chr16:10122973-10142373 (+)
WSB/EiJ	ENSIUOG00005016722	lncRNA gene	Chr16:10243896-10263341 (+)

Homology

• Gene Tree
  Gm53058
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  109
• RefSeq
  3

• Ensembl
  ENSMUSG00000109857 (Evidence)
• NCBI Gene
  118027462

Representative Sequences			Length	Strain/Species
genomic	118027462	NCBI Gene Model | MGI Sequence Detail	19279	C57BL/6J
transcript	NR_169187	RefSeq | MGI Sequence Detail	844	ZRU/MplStud

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53058:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137136	Chr16:13265578-13265583 (+)	-235 bp
Tssr137137	Chr16:13265805-13265831 (+)	2 bp
Tssr137138	Chr16:13265836-13265858 (+)	31 bp