Gm53047 Pseudogene Detail

Summary

• Symbol
  Gm53047
• Name
  predicted gene, 53047

• Feature Type
  pseudogene
• IDs
  MGI:6388942
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:28216723-28216803 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  71 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388942	pseudogene	Chr7:28216723-28216803 (+)
129S1/SvImJ	ENSMUSG00200046143	pseudogene	Chr7:18002656-18002736 (+)
A/J	ENSMUSG00195051415	pseudogene	Chr7:20675898-20675978 (+)
AKR/J	ENSMUSG00220053366	pseudogene	Chr7:23809832-23809912 (-)
BALB/cJ	ENSMUSG00180053947	pseudogene	Chr7:18735448-18735528 (+)
C3H/HeJ	ENSMUSG00175052524	pseudogene	Chr7:19770985-19771065 (+)
C57BL/6NJ	ENSMUSG00215054838	pseudogene	Chr7:17906604-17906684 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052591	pseudogene	Chr7:19703059-19703139 (+)
CBA/J	ENSMUSG00210053723	pseudogene	Chr7:18955572-18955652 (+)
DBA/2J	ENSMUSG00185054891	pseudogene	Chr7:22068263-22068343 (+)
FVB/NJ	ENSMUSG00205052066	pseudogene	Chr7:18741359-18741439 (+)
JF1/MsJ	ENSUMUG00000057666	pseudogene	Chr7:26469124-26469204 (+)
LP/J	ENSMUSG00230053872	pseudogene	Chr7:27238799-27238879 (+)
NOD/ShiLtJ	ENSMUSG00190053261	pseudogene	Chr7:18402553-18402633 (+)
NZO/HlLtJ	ENSMUSG00225027579	pseudogene	Chr7:26081932-26082012 (+)
PWK/PhJ	ENSLUMG00010051425	pseudogene	Chr7:18432953-18433033 (+)
SPRET/EiJ	ENSMSPG00010051280	pseudogene	Chr7:17791300-17791380 (+)
WSB/EiJ	ENSIUOG00005053604	pseudogene	Chr7:12663100-12663180 (+)

Homology

• Gene Tree
  Gm53047
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118574 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118574	Ensembl Gene Model | MGI Sequence Detail	81	C57BL/6J
transcript	ENSMUST00000239126	Ensembl | MGI Sequence Detail	81	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;