Gm53044 Pseudogene Detail

Summary

• Symbol
  Gm53044
• Name
  predicted gene, 53044

• Feature Type
  pseudogene
• IDs
  MGI:6388938
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr5:87110235-87110423 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388938	pseudogene	Chr5:87110235-87110423 (+)
129S1/SvImJ	ENSMUSG00200009482	pseudogene	Chr5:82850213-82850401 (+)
A/J	ENSMUSG00195026897	pseudogene	Chr5:82011578-82011766 (+)
AKR/J	ENSMUSG00220012595	pseudogene	Chr5:82145490-82145678 (+)
BALB/cJ	ENSMUSG00180025415	pseudogene	Chr5:81842153-81842341 (+)
C3H/HeJ	ENSMUSG00175045863	pseudogene	Chr5:83920259-83920447 (+)
C57BL/6NJ	ENSMUSG00215033735	pseudogene	Chr5:82704634-82704822 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038572	pseudogene	Chr5:81531867-81532057 (+)
CBA/J	ENSMUSG00210006214	pseudogene	Chr5:82739088-82739276 (+)
DBA/2J	ENSMUSG00185041721	pseudogene	Chr5:84658237-84658425 (+)
FVB/NJ	ENSMUSG00205001159	pseudogene	Chr5:81543032-81543220 (+)
JF1/MsJ	ENSUMUG00000001154	pseudogene	Chr5:89107970-89108160 (+)
LP/J	ENSMUSG00230001778	pseudogene	Chr5:89380164-89380352 (+)
NOD/ShiLtJ	ENSMUSG00190043765	pseudogene	Chr5:81600403-81600591 (+)
NZO/HlLtJ	ENSMUSG00225010008	pseudogene	Chr5:94404754-94404942 (+)
PWK/PhJ	ENSLUMG00010031444	pseudogene	Chr5:81619103-81619293 (+)
SPRET/EiJ	ENSMSPG00010037934	pseudogene	Chr5:83887111-83887304 (+)
WSB/EiJ	ENSIUOG00005030874	pseudogene	Chr5:84561887-84562075 (+)

Homology

• Gene Tree
  Gm53044
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118539 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118539	Ensembl Gene Model | MGI Sequence Detail	189	C57BL/6J
transcript	ENSMUST00000238959	Ensembl | MGI Sequence Detail	189	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;