Gm53042 Gene Detail

Summary

• Symbol
  Gm53042
• Name
  predicted gene, 53042

• Feature Type
  lncRNA gene
• IDs
  MGI:6388935
  NCBI Gene: 115487730
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:65050704-65061086 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  384 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388935	lncRNA gene	Chr11:65050704-65062061 (+)
129S1/SvImJ	ENSMUSG00200050553	lncRNA gene	Chr11:61974492-61985747 (+)
A/J	ENSMUSG00195052846	lncRNA gene	Chr11:62016715-62027981 (+)
AKR/J	ENSMUSG00220054181	lncRNA gene	Chr11:62128741-62139997 (+)
BALB/cJ	ENSMUSG00180054016	lncRNA gene	Chr11:62057379-62068635 (+)
C3H/HeJ	ENSMUSG00175054451	lncRNA gene	Chr11:62033191-62044456 (+)
C57BL/6NJ	ENSMUSG00215055130	lncRNA gene	Chr11:61816078-61827343 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047050	lncRNA gene	Chr11:61593041-61604307 (+)
CBA/J	ENSMUSG00210054374	lncRNA gene	Chr11:61862814-61874069 (+)
DBA/2J	ENSMUSG00185056683	lncRNA gene	Chr11:62056931-62068187 (+)
FVB/NJ	ENSMUSG00205053987	lncRNA gene	Chr11:61941378-61952651 (+)
JF1/MsJ	ENSUMUG00000057285	lncRNA gene	Chr11:62459571-62470858 (+)
LP/J	ENSMUSG00230053910	lncRNA gene	Chr11:63195534-63206789 (+)
NOD/ShiLtJ	ENSMUSG00190054228	lncRNA gene	Chr11:62065086-62076358 (+)
NZO/HlLtJ	ENSMUSG00225047745	lncRNA gene	Chr11:65370241-65381508 (+)
PWK/PhJ	ENSLUMG00010036911	lncRNA gene	Chr11:61976024-61987301 (+)
SPRET/EiJ	ENSMSPG00010049216	lncRNA gene	Chr11:62680019-62691292 (+)
WSB/EiJ	ENSIUOG00005052844	lncRNA gene	Chr11:61977571-61988825 (+)

Homology

• Gene Tree
  Gm53042
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  1

• Ensembl
  ENSMUSG00000118601 (Evidence)
• NCBI Gene
  115487730

Representative Sequences			Length	Strain/Species
genomic	115487730	NCBI Gene Model | MGI Sequence Detail	10383	C57BL/6J
transcript	XR_003949568	RefSeq | MGI Sequence Detail	1967	C57BL/6J

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53042:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102125	Chr11:65050783-65050810 (+)	93 bp