Gm53041 Pseudogene Detail

Summary

• Symbol
  Gm53041
• Name
  predicted gene, 53041

• Feature Type
  pseudogene
• IDs
  MGI:6388934
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:48541299-48543071 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  184 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388934	pseudogene	Chr6:48541299-48543071 (+)
129S1/SvImJ	ENSMUSG00200005531	pseudogene	Chr6:45446922-45448694 (+)
A/J	ENSMUSG00195006828	pseudogene	Chr6:45217626-45219398 (+)
AKR/J	ENSMUSG00220004652	pseudogene	Chr6:44927067-44928839 (+)
BALB/cJ	ENSMUSG00180027488	pseudogene	Chr6:45530476-45532248 (+)
C3H/HeJ	ENSMUSG00175018691	pseudogene	Chr6:45292120-45293892 (+)
C57BL/6NJ	ENSMUSG00215010804	pseudogene	Chr6:45491967-45493739 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005139	pseudogene	Chr6:44808917-44810748 (+)
CBA/J	ENSMUSG00210018385	pseudogene	Chr6:45336960-45338732 (+)
DBA/2J	ENSMUSG00185014394	pseudogene	Chr6:45918653-45920425 (+)
FVB/NJ	ENSMUSG00205035661	pseudogene	Chr6:45583104-45584876 (+)
JF1/MsJ	ENSUMUG00000016234	pseudogene	Chr6:45281529-45283293 (+)
LP/J	ENSMUSG00230020103	pseudogene	Chr6:46944045-46945817 (+)
NOD/ShiLtJ	ENSMUSG00190035668	pseudogene	Chr6:45256856-45258628 (+)
NZO/HlLtJ	ENSMUSG00225019618	pseudogene	Chr6:48980578-48982350 (+)
PWK/PhJ	ENSLUMG00010020927	pseudogene	Chr6:44916175-44917947 (+)
SPRET/EiJ	ENSMSPG00010010412	pseudogene	Chr6:45541694-45543526 (+)
WSB/EiJ	ENSIUOG00005029010	pseudogene	Chr6:45554865-45556634 (+)

Homology

• Gene Tree
  Gm53041
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118619 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118619	Ensembl Gene Model | MGI Sequence Detail	1773	C57BL/6J
transcript	ENSMUST00000239256	Ensembl | MGI Sequence Detail	1773	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;