Gm53040 Pseudogene Detail

Summary

• Symbol
  Gm53040
• Name
  predicted gene, 53040

• Feature Type
  pseudogene
• IDs
  MGI:6388933
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr8:88836414-88837600 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388933	pseudogene	Chr8:88836414-88837600 (+)
129S1/SvImJ	ENSMUSG00200017407	pseudogene	Chr8:83193169-83194348 (+)
A/J	ENSMUSG00195029043	pseudogene	Chr8:83564653-83565631 (+)
AKR/J	ENSMUSG00220039292	pseudogene	Chr8:83592193-83593372 (+)
BALB/cJ	ENSMUSG00180023717	pseudogene	Chr8:83396755-83397934 (+)
C3H/HeJ	ENSMUSG00175026580	pseudogene	Chr8:83500059-83501037 (+)
C57BL/6NJ	ENSMUSG00215031034	pseudogene	Chr8:83103315-83104501 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017946	pseudogene	Chr8:82961216-82962202 (+)
CBA/J	ENSMUSG00210038707	pseudogene	Chr8:83467869-83469056 (+)
DBA/2J	ENSMUSG00185038893	pseudogene	Chr8:89576451-89577638 (+)
FVB/NJ	ENSMUSG00205017044	pseudogene	Chr8:82523695-82524883 (+)
JF1/MsJ	ENSUMUG00000048502	pseudogene	Chr8:91899418-91900396 (+)
LP/J	ENSMUSG00230032044	pseudogene	Chr8:93189975-93191154 (+)
NOD/ShiLtJ	ENSMUSG00190016840	pseudogene	Chr8:83557423-83558602 (+)
NZO/HlLtJ	ENSMUSG00225040499	pseudogene	Chr8:96593771-96594958 (+)
PWK/PhJ	ENSLUMG00010041244	pseudogene	Chr8:83210391-83211369 (+)
SPRET/EiJ	ENSMSPG00010031709	pseudogene	Chr8:85142145-85143131 (+)
WSB/EiJ	ENSIUOG00005019469	pseudogene	Chr8:84281304-84282490 (+)

Homology

• Gene Tree
  Gm53040
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118626 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118626	Ensembl Gene Model | MGI Sequence Detail	1187	C57BL/6J
transcript	ENSMUST00000239289	Ensembl | MGI Sequence Detail	1187	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;