Gm53039 Pseudogene Detail

Summary

• Symbol
  Gm53039
• Name
  predicted gene, 53039

• Feature Type
  pseudogene
• IDs
  MGI:6388932
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr6:114728320-114728488 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388932	pseudogene	Chr6:114728320-114728488 (+)
129S1/SvImJ	ENSMUSG00200026123	pseudogene	Chr6:111943105-111943273 (+)
A/J	ENSMUSG00195017174	pseudogene	Chr6:111334133-111334301 (+)
AKR/J	ENSMUSG00220037191	pseudogene	Chr6:110250257-110250425 (+)
BALB/cJ	ENSMUSG00180002442	pseudogene	Chr6:111699845-111700013 (+)
C3H/HeJ	ENSMUSG00175034269	pseudogene	Chr6:65730454-65730622 (-)
C57BL/6NJ	ENSMUSG00215025955	pseudogene	Chr6:111686952-111687120 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005030238	pseudogene	Chr6:111552279-111552447 (+)
CBA/J	ENSMUSG00210020939	pseudogene	Chr6:111507367-111507535 (+)
DBA/2J	ENSMUSG00185049987	pseudogene	Chr6:112141590-112141758 (+)
FVB/NJ	ENSMUSG00205028159	pseudogene	Chr6:110569622-110569790 (+)
JF1/MsJ	ENSUMUG00000031716	pseudogene	Chr6:110802280-110802448 (+)
LP/J	ENSMUSG00230049180	pseudogene	Chr6:113345990-113346158 (+)
NOD/ShiLtJ	ENSMUSG00190018632	pseudogene	Chr6:111095833-111096001 (+)
NZO/HlLtJ	ENSMUSG00225048346	pseudogene	Chr6:115201691-115201859 (+)
PWK/PhJ	ENSLUMG00010028309	pseudogene	Chr6:110103323-110103491 (+)
SPRET/EiJ	ENSMSPG00010047134	pseudogene	Chr6:112899535-112899703 (+)
WSB/EiJ	ENSIUOG00005025830	pseudogene	Chr6:111831954-111832122 (+)

Homology

• Gene Tree
  Gm53039
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118568 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118568	Ensembl Gene Model | MGI Sequence Detail	169	C57BL/6J
transcript	ENSMUST00000238907	Ensembl | MGI Sequence Detail	169	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;