Gm53038 Pseudogene Detail

Summary

• Symbol
  Gm53038
• Name
  predicted gene, 53038

• Feature Type
  pseudogene
• IDs
  MGI:6388931
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:97588556-97589999 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388931	pseudogene	Chr1:97588556-97589999 (+)
129S1/SvImJ	ENSMUSG00200000268	pseudogene	Chr1:94769566-94771009 (+)
A/J	ENSMUSG00195000414	pseudogene	Chr1:94299452-94300895 (+)
AKR/J	ENSMUSG00220000348	pseudogene	Chr1:94601048-94602491 (+)
BALB/cJ	ENSMUSG00180005722	pseudogene	Chr1:94607168-94608611 (+)
C3H/HeJ	ENSMUSG00175005582	pseudogene	Chr1:94507222-94508665 (+)
C57BL/6NJ	ENSMUSG00215000406	pseudogene	Chr1:94495516-94496959 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000149	pseudogene	Chr1:94088288-94089735 (+)
CBA/J	ENSMUSG00210000135	pseudogene	Chr1:94357222-94358665 (+)
DBA/2J	ENSMUSG00185014551	pseudogene	Chr1:98826851-98828294 (+)
FVB/NJ	ENSMUSG00205000867	pseudogene	Chr1:93710755-93712198 (+)
JF1/MsJ	ENSUMUG00000022993	pseudogene	Chr1:97586351-97587813 (+)
LP/J	ENSMUSG00230024287	pseudogene	Chr1:98090438-98091881 (+)
NOD/ShiLtJ	ENSMUSG00190000378	pseudogene	Chr1:94415896-94417339 (+)
NZO/HlLtJ	ENSMUSG00225003947	pseudogene	Chr1:101999920-102001363 (+)
PWK/PhJ	ENSLUMG00010006758	pseudogene	Chr1:93944765-93946223 (+)
SPRET/EiJ	ENSMSPG00010000951	pseudogene	Chr1:96082867-96084325 (+)
WSB/EiJ	ENSIUOG00005000330	pseudogene	Chr1:94089295-94090738 (+)

Homology

• Gene Tree
  Gm53038
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118489 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118489	Ensembl Gene Model | MGI Sequence Detail	1444	C57BL/6J
transcript	ENSMUST00000238965	Ensembl | MGI Sequence Detail	1444	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;