Gm53026 Pseudogene Detail

Summary

• Symbol
  Gm53026
• Name
  predicted gene, 53026

• Feature Type
  pseudogene
• IDs
  MGI:6388918
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:113979236-113980565 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  368 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388918	pseudogene	Chr4:113979236-113980565 (+)
129S1/SvImJ	ENSMUSG00200050640	pseudogene	Chr4:107878212-107879532 (+)
A/J	ENSMUSG00195047494	pseudogene	Chr4:108335710-108337040 (+)
AKR/J	ENSMUSG00220012693	pseudogene	Chr4:108476191-108477512 (+)
BALB/cJ	ENSMUSG00180048421	pseudogene	Chr4:107217294-107218619 (+)
C3H/HeJ	ENSMUSG00175042924	pseudogene	Chr4:108231833-108233158 (+)
C57BL/6NJ	ENSMUSG00215034675	pseudogene	Chr4:109349418-109350747 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005022780	pseudogene	Chr4:108012309-108013630 (+)
CBA/J	ENSMUSG00210053345	pseudogene	Chr4:107845405-107846730 (+)
DBA/2J	ENSMUSG00185050949	pseudogene	Chr4:108499208-108500538 (+)
FVB/NJ	ENSMUSG00205045259	pseudogene	Chr4:106653791-106655121 (+)
JF1/MsJ	ENSUMUG00000047845	pseudogene	Chr4:109317730-109319051 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190048537	pseudogene	Chr4:107214823-107216148 (+)
NZO/HlLtJ	ENSMUSG00225011723	pseudogene	Chr4:118166422-118167751 (+)
PWK/PhJ	ENSLUMG00010047788	pseudogene	Chr4:106710531-106711851 (+)
SPRET/EiJ	ENSMSPG00010030983	pseudogene	Chr4:108839716-108841047 (+)
WSB/EiJ	ENSIUOG00005045518	pseudogene	Chr4:107542215-107543534 (+)

Homology

• Gene Tree
  Gm53026
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm53026
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000118515 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118515	Ensembl Gene Model | MGI Sequence Detail	1330	C57BL/6J
transcript	ENSMUST00000238945	Ensembl | MGI Sequence Detail	1330	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:262448 Narita T, et al., Mice lacking all of the Skint family genes. Int Immunol. 2018 Apr 26;
• Latest
  J:323863 McKenzie DR, et al., Normality sensing licenses local T cells for innate-like tissue surveillance. Nat Immunol. 2022 Mar;23(3):411-422