Gm53024 Pseudogene Detail

Summary

• Symbol
  Gm53024
• Name
  predicted gene, 53024

• Feature Type
  pseudogene
• IDs
  MGI:6388916
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr16:16200523-16200736 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  160 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388916	pseudogene	Chr16:16200523-16200736 (+)
129S1/SvImJ	ENSMUSG00200047011	pseudogene	Chr16:13196944-13197157 (+)
A/J	ENSMUSG00195035924	pseudogene	Chr16:12753886-12754099 (+)
AKR/J	ENSMUSG00220046957	pseudogene	Chr16:13070129-13070342 (+)
BALB/cJ	ENSMUSG00180041252	pseudogene	Chr16:12995205-12995418 (+)
C3H/HeJ	ENSMUSG00175050101	pseudogene	Chr16:13140216-13140429 (+)
C57BL/6NJ	ENSMUSG00215041673	pseudogene	Chr16:12861326-12861539 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005045658	pseudogene	Chr16:13020171-13020384 (+)
CBA/J	ENSMUSG00210047499	pseudogene	Chr16:13156577-13156790 (+)
DBA/2J	ENSMUSG00185034001	pseudogene	Chr16:13102691-13102904 (+)
FVB/NJ	ENSMUSG00205048147	pseudogene	Chr16:13111338-13111551 (+)
JF1/MsJ	ENSUMUG00000053511	pseudogene	Chr16:13155116-13155331 (+)
LP/J	ENSMUSG00230046105	pseudogene	Chr16:15680642-15680855 (+)
NOD/ShiLtJ	ENSMUSG00190051109	pseudogene	Chr16:13242645-13242858 (+)
NZO/HlLtJ	ENSMUSG00225032271	pseudogene	Chr16:18926418-18926631 (+)
PWK/PhJ	ENSLUMG00010050390	pseudogene	Chr16:13028804-13029019 (+)
SPRET/EiJ	ENSMSPG00010047804	pseudogene	Chr16:13063986-13064199 (+)
WSB/EiJ	ENSIUOG00005043757	pseudogene	Chr16:13213841-13214054 (+)

Homology

• Gene Tree
  Gm53024
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118629 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118629	Ensembl Gene Model | MGI Sequence Detail	214	C57BL/6J
transcript	ENSMUST00000239385	Ensembl | MGI Sequence Detail	214	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;