Gm53023 Pseudogene Detail

Summary

• Symbol
  Gm53023
• Name
  predicted gene, 53023

• Feature Type
  pseudogene
• IDs
  MGI:6388915
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:23918473-23919087 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388915	pseudogene	Chr17:23918473-23919087 (-)
129S1/SvImJ	ENSMUSG00200039261	pseudogene	Chr17:19337005-19337632 (-)
A/J	ENSMUSG00195038548	pseudogene	Chr17:20355207-20355833 (-)
AKR/J	ENSMUSG00220028929	pseudogene	Chr17:19416492-19417106 (-)
BALB/cJ	ENSMUSG00180020012	pseudogene	Chr17:19637818-19638444 (-)
C3H/HeJ	ENSMUSG00175042562	pseudogene	Chr17:19423269-19423895 (-)
C57BL/6NJ	ENSMUSG00215043169	pseudogene	Chr17:19426208-19426822 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023893	pseudogene	Chr17:20002189-20002814 (-)
CBA/J	ENSMUSG00210041530	pseudogene	Chr17:19262126-19262752 (-)
DBA/2J	ENSMUSG00185053358	pseudogene	Chr17:21444016-21444642 (-)
FVB/NJ	ENSMUSG00205036589	pseudogene	Chr17:19713248-19713874 (-)
JF1/MsJ	ENSUMUG00000057526	pseudogene	Chr17:20918286-20918911 (-)
LP/J	ENSMUSG00230055144	pseudogene	Chr17:22841919-22842546 (-)
NOD/ShiLtJ	ENSMUSG00190040048	pseudogene	Chr17:19342282-19342906 (-)
NZO/HlLtJ	ENSMUSG00225054819	pseudogene	Chr17:24764984-24765610 (-)
PWK/PhJ	ENSLUMG00010021860	pseudogene	Chr17:18813731-18814356 (-)
SPRET/EiJ	ENSMSPG00010040943	pseudogene	Chr17:20167566-20168198 (-)
WSB/EiJ	ENSIUOG00005042674	pseudogene	Chr17:20090675-20091301 (-)

Homology

• Gene Tree
  Gm53023
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000118572 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118572	Ensembl Gene Model | MGI Sequence Detail	615	C57BL/6J
transcript	ENSMUST00000239094	Ensembl | MGI Sequence Detail	615	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53023:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146649	Chr17:23919155-23919175 (-)	-78 bp
Tssr146648	Chr17:23919116-23919146 (-)	-44 bp