Gm53019 Gene Detail

Summary

• Symbol
  Gm53019
• Name
  predicted gene, 53019

• Feature Type
  lncRNA gene
• IDs
  MGI:6388910
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr13:24507691-24513023 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  246 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388910	lncRNA gene	Chr13:24507691-24513023 (-)
129S1/SvImJ	ENSMUSG00200031153	lncRNA gene	Chr13:21639038-21644366 (-)
A/J	ENSMUSG00195040751	lncRNA gene	Chr13:20788238-20793566 (-)
AKR/J	ENSMUSG00220013231	lncRNA gene	Chr13:20609370-20614698 (-)
BALB/cJ	ENSMUSG00180024115	lncRNA gene	Chr13:21106732-21112060 (-)
C3H/HeJ	ENSMUSG00175032600	lncRNA gene	Chr13:21113000-21118328 (-)
C57BL/6NJ	ENSMUSG00215015166	lncRNA gene	Chr13:21268515-21273843 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011229	lncRNA gene	Chr13:21279846-21280429 (-)
CBA/J	ENSMUSG00210028184	lncRNA gene	Chr13:21068199-21073527 (-)
DBA/2J	ENSMUSG00185021475	lncRNA gene	Chr13:21890146-21895474 (-)
FVB/NJ	ENSMUSG00205034770	lncRNA gene	Chr13:20908834-20914162 (-)
JF1/MsJ	ENSUMUG00000023462	lncRNA gene	Chr13:21557965-21558548 (-)
LP/J	ENSMUSG00230020442	lncRNA gene	Chr13:31217214-31222542 (-)
NOD/ShiLtJ	ENSMUSG00190039090	lncRNA gene	Chr13:20890825-20896154 (-)
NZO/HlLtJ	ENSMUSG00225045629	lncRNA gene	Chr13:25002407-25007735 (-)
PWK/PhJ	ENSLUMG00010030996	lncRNA gene	Chr13:20435352-20441848 (-)
SPRET/EiJ	ENSMSPG00010027473	lncRNA gene	Chr13:20228901-20234247 (-)
WSB/EiJ	ENSIUOG00005017347	lncRNA gene	Chr13:20412883-20418212 (-)

Homology

• Gene Tree
  Gm53019
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000118631 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118631	Ensembl Gene Model | MGI Sequence Detail	5333	C57BL/6J
transcript	ENSMUST00000239334	Ensembl | MGI Sequence Detail	1597	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm53019:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr121783	Chr13:24514188-24514201 (-)	-1,172 bp
Tssr121782	Chr13:24513107-24513130 (-)	-96 bp
Tssr121781	Chr13:24513028-24513035 (-)	-9 bp
Tssr121780	Chr13:24513006-24513018 (-)	11 bp