Gm53017 Pseudogene Detail

Summary

• Symbol
  Gm53017
• Name
  predicted gene, 53017

• Feature Type
  pseudogene
• IDs
  MGI:6388907
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr15:101574441-101574581 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  69 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_6388907	pseudogene	Chr15:101574441-101574581 (+)
129S1/SvImJ	ENSMUSG00200052359	pseudogene	Chr15:98793204-98793344 (+)
A/J	ENSMUSG00195046683	pseudogene	Chr15:98669634-98669774 (+)
AKR/J	ENSMUSG00220049518	pseudogene	Chr15:98659776-98659916 (+)
BALB/cJ	ENSMUSG00180048782	pseudogene	Chr15:98563201-98563341 (+)
C3H/HeJ	ENSMUSG00175049124	pseudogene	Chr15:98849628-98849768 (+)
C57BL/6NJ	ENSMUSG00215051712	pseudogene	Chr15:98615288-98615428 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048123	pseudogene	Chr15:98092876-98093016 (+)
CBA/J	ENSMUSG00210032260	pseudogene	Chr15:98622800-98622940 (+)
DBA/2J	ENSMUSG00185042650	pseudogene	Chr15:98659770-98659910 (+)
FVB/NJ	ENSMUSG00205048639	pseudogene	Chr15:98364244-98364384 (+)
JF1/MsJ	ENSUMUG00000057642	pseudogene	Chr15:98120349-98120489 (+)
LP/J	ENSMUSG00230040360	pseudogene	Chr15:102016837-102016977 (+)
NOD/ShiLtJ	ENSMUSG00190049206	pseudogene	Chr15:98599062-98599202 (+)
NZO/HlLtJ	ENSMUSG00225028219	pseudogene	Chr15:102201091-102201231 (+)
PWK/PhJ	ENSLUMG00010049852	pseudogene	Chr15:98333044-98333184 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005040580	pseudogene	Chr15:98751478-98751618 (+)

Homology

• Gene Tree
  Gm53017
  

Expression

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000118545 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118545	Ensembl Gene Model | MGI Sequence Detail	141	C57BL/6J
transcript	ENSMUST00000239024	Ensembl | MGI Sequence Detail	141	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;